Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00587 ATGTGGGATCACAAAACCGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTGACCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAATGGCTGGGAAATAGGCAAATACGATGCAATTGGGCAACTAAGGGTGCTGGTGCCAGCTCCACTGAAGAGAAGAACAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAAGATGCTCCTGAAAACAATCCTTCATACACAACAGTTTATGTCGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCATGGATTGGGAGCTGGGGTAATTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGATGTCTAATGGAAGACTAATTCGTGGGAAGGCTATGAAGTGTTCATGGGGTAGCAAACCAACTCCTCCTGGAACAGCTTCAAATCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGCTATTCTCCCGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGCCTTTCAGGTCAAGCACTTCTGCAAATGACCGGACAACATGGCCTAGCTCCTGCTTCAATGGGCATAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACTGGTAACTCATCAAGACAGCAGCTTATGTACTATCGCTGA 792 0.4609 MWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGASSTEEKNNDNQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHGLGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMSNGRLIRGKAMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGGSQAMYDGYTGNSSRQQLMYYR. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00587 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 158 IPR000504 GO:0003723
Seca3g00587 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 41 IPR000504 GO:0003723
Seca3g00587 263 SUPERFAMILY RNA-binding domain, RBD 1 73 IPR035979 GO:0003676
Seca3g00587 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 165 IPR000504 GO:0003723
Seca3g00587 263 MobiDBLite consensus disorder prediction 49 90 - -
Seca3g00587 263 SUPERFAMILY RNA-binding domain, RBD 80 174 IPR035979 GO:0003676
Seca3g00587 263 FunFam Oligouridylate-binding protein 1C 68 169 - -
Seca3g00587 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Seca3g00587 263 Gene3D - 68 169 IPR012677 -
Seca3g00587 263 Gene3D - 1 64 IPR012677 -
Seca3g00587 263 SMART rrm1_1 92 161 IPR000504 GO:0003723
Seca3g00587 263 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00587 Seca-Chr3 9168258 9173445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00587 5 165 Eukaryotic Initiation Factors Gene Family AT1G22760 25.000 4.62e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00587 K13201 - gmx:100777108 513.457