Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00582 ATGAATATCAGATTCCCAACGTTAGGAAAGTTTAAGGTTTTCCCAGAGAATCATGAGACATGGAAGAAGAGAATTATTGATCCTGGCAGTGATATGTTTTTGGAGTGGAACAGGGCTTTCCTGTTTTCTTGCATACTAGCATTGTTTGTTGATCCACTGTTTTTCTACCTTCCATCAGTAGCAAATGATGGGAATTCATCATGTATGGCTACTGATTTGAATTTAGGAATTGTTGTCACATGTTTCCGTACATTTGCTGATGTTTTCTATCTGCTGAACATGGTCATAAAGTTCAGGACTGCCTATGTGTCACCAAGTTCAAGGGTTTTTGGAAGGGGTGAACTTGTTATGGATCCAAGGTTGATTGCTAGGCGGTATTTGAGATCAGATTTCTTCCTAGATCTTGTAGCTACACTGCCTCTTCCCCAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCTCTTGTACTGATTGTTCTGCTTCAATATGCCCCCAGATTATATTTGATTTTCCCTTTAAGTTCTCAGATTATTAAAGCCACTGGTGTGGTTACAAAGACAGCTTGGGCTGGAGCTGCTTACAATCTTTTACTTTACATGTTAGCTAGTCATGTATTGGGGGCATCATGGTACTTGTTGTCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGTAGAAATGAAATCCTCCCTGTAAAATGTGTTCTTAAGTACTTGGATTGTAGTAGTTTAAACAATGATGATCGCATGAAGTGGGCAAATACCACTTCTGTGTTTGGTAACTGCAATCCAGAAAATAGCACCAATTTCAACTATGGAATTTTTGGAAATGCAGTGGAAAATAATGTTGTCTCCTCTGCATTTATAGAGAAGTACCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTGAGTTCCTATGGCCAGGGTTTGACTACAAGCACATTCGTTTGGGAAACTGCATTTGCAATAGTCATGTCTATTCTTGGTCTAGTTTTGTTTGCTCACTTAATTGGTAACATGCAGACCTATTTGCAATCCATTACTGTGAGGCTTGAAGAGTGGAGACTCAAGCGACGTGACACTGAAGAATGGATGAGTCATCGCCAGCTTCCACAACATCTCAGAGAACGTGTCAGAAGATTTGTTCAATACAAATGGCTTGCAACTCGTGGGGTTGATGAAGAAACAATCTTAAGAGGCCTGCCTATAGACCTCCGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGGGTTCCATTTTTCTCTCAAATGGATGATCAGCTACTTGATGCAATATGTGAGCGATTGGTATCATCCTTGAGTACTCAAGGCACATACATAGTCAGAGAAGGAGATCCTGTCACAGAGATGCTTTTTATCATTAGAGGGAGACTTGAAAGCTCAACAACAAATGGAGGCAGAACTGGTTTCTTTAACTCCATCACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAACTACTTGCTTGGGCATTGCTTCCAAAATCTACTCTCAACTTGCCTTCTTCTACAAGAACAGTTAGAGCCCTTGTAGAAGTGGAAGCCTTTGCACTCAGAGCAGAAGATCTTAAGTTTGTAGCCAATCAATTTAGACGTCTCCACAGCAAGAAGTTACAGCATACCTTCCGTTTCTACTCTTACCATTGGAGGACATGGGCTGCTTGCTTCATTCAGGCTGCATGGCGCCGGTACAAGAAGAGAATGTTGGCAAATAGCCTTAGCTTGAGGGAATTCAAGTCCTTCAATGATGGTGAACAAGTCAGGAATCAAATGGAACATGAAGAAGAAGAGAGCAGTGCTGTGACTTCAAACACTGCACAAGTAAAACAGCACCTAGGTGTCACTATACTGGCTTCAAGATTTGCTGCAAACACAAGGAGAGGAATTCAGAAGATCAAGGATGTAGAGCTGCCCAAGTTGCAAAAGCCTGAAGAACCAGACTTCTCAGTAGAGCCTGATGAAGATTAG 2028 0.4172 MNIRFPTLGKFKVFPENHETWKKRIIDPGSDMFLEWNRAFLFSCILALFVDPLFFYLPSVANDGNSSCMATDLNLGIVVTCFRTFADVFYLLNMVIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSDFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYAPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNEILPVKCVLKYLDCSSLNNDDRMKWANTTSVFGNCNPENSTNFNYGIFGNAVENNVVSSAFIEKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAIVMSILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQHLRERVRRFVQYKWLATRGVDEETILRGLPIDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRYKKRMLANSLSLREFKSFNDGEQVRNQMEHEEEESSAVTSNTAQVKQHLGVTILASRFAANTRRGIQKIKDVELPKLQKPEEPDFSVEPDED. 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00582 675 Pfam Ion transport protein 36 361 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g00582 675 Gene3D Jelly Rolls 432 552 IPR014710 -
Seca3g00582 675 Pfam Cyclic nucleotide-binding domain 457 545 IPR000595 -
Seca3g00582 675 SMART cnmp_10 434 565 IPR000595 -
Seca3g00582 675 ProSiteProfiles cAMP/cGMP binding motif profile. 434 517 IPR000595 -
Seca3g00582 675 MobiDBLite consensus disorder prediction 652 667 - -
Seca3g00582 675 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 17 668 - -
Seca3g00582 675 PRINTS EAG/ELK/ERG potassium channel family signature 347 356 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00582 675 PRINTS EAG/ELK/ERG potassium channel family signature 94 103 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00582 675 PRINTS EAG/ELK/ERG potassium channel family signature 397 404 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00582 675 PRINTS EAG/ELK/ERG potassium channel family signature 329 340 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00582 675 PRINTS EAG/ELK/ERG potassium channel family signature 303 320 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00582 675 CDD CAP_ED 434 565 IPR000595 -
Seca3g00582 675 SUPERFAMILY cAMP-binding domain-like 364 556 IPR018490 -
Seca3g00582 675 Gene3D Helix hairpin bin 362 425 - -
Seca3g00582 675 SUPERFAMILY Voltage-gated potassium channels 30 356 - -
Seca3g00582 675 Gene3D - 41 360 - -
Seca3g00582 675 MobiDBLite consensus disorder prediction 652 675 - -
Seca3g00582 675 FunFam Cyclic nucleotide-gated ion channel 1 432 550 - -
Seca3g00582 675 FunFam Cyclic nucleotide-gated ion channel 1 361 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00582 Seca-Chr3 9125811 9130615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00582 3 671 Ion Channels AT2G24610 74.704 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00582 K05391 - gmx:100803334 1269.6