Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00578 ATGGCGGTGGAACTCATGGGGTTCCCAAAAATGGACGAACAAAAGGCAATTCAAGAGGCTGCATCTGAAGGCTTAAAGGGAATGGAGCACCTCGTTCGTCTCCTCTCTCACCAACCCTCTCATCTTCACTCTGATCTCACCGACATAACCGTTTCCAAGTTCAAAAAACTCATCTCCTTACTCAATCGCACCGGCCACGCCCGTTTCCGCCGCGCTCCTATTCCCTCCTCTCCCTCCACCTCCACCGCCACACCTTCTTCCCTCTCTCTACTTCACCCTCACACTTCAACTCCATCTCCGCCGCCGGTAAACCCTGTCATCGTTAACCACCCTCACTCGCAGAGTTTGACTCTCGATTTCACAAAACCTAACATCTTGAACTCCAACGCTAAATCCTTGGAGCTTGAGTTCTCCAAGGAAACCTTCAGCGTTTCCTCTAACTCCTCCTTCATCTCCTCCGCCATCACGGGCGACGGCAGCGTTTCTAACGGCAAGCAAGGATCCTCCATCTTCCTCACACCTGCAGTTTCCGGCGGGAAGCCTCCACTCTCAACGCCGTCGTTCAAGAAAAGGTGTCACGAACACTCCGATGACGTCTCCGGCTCCAACAGCAAGTGCCACTGCACCAAGAAAAGCAGGAAAAATAGGGTGAAAAAGACGATAAGAGTTCCGGCGATTAGTTCAAAGGTCGCTGATATTCCTTCGGACGAGTACTCGTGGAGGAAGTACGGTCAGAAACCGATCAAGGGATCGCCCTACCCAAGGGGGTATTATAAGTGCAGTACGGTGAGAGGGTGCCCGGCGAGGAAACACGTGGAGAGGGCCACGGATGATCCAGCGATGCTGATCGTAACGTATGAGGGGGAACACCGTCATGTGATTCAAACCGCGATGCACGAGAACATTTCCGGGGCTGTGGGTTTGGTATTCGAGTCAACGTAA 942 0.5276 MAVELMGFPKMDEQKAIQEAASEGLKGMEHLVRLLSHQPSHLHSDLTDITVSKFKKLISLLNRTGHARFRRAPIPSSPSTSTATPSSLSLLHPHTSTPSPPPVNPVIVNHPHSQSLTLDFTKPNILNSNAKSLELEFSKETFSVSSNSSFISSAITGDGSVSNGKQGSSIFLTPAVSGGKPPLSTPSFKKRCHEHSDDVSGSNSKCHCTKKSRKNRVKKTIRVPAISSKVADIPSDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEGEHRHVIQTAMHENISGAVGLVFEST. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00578 313 SMART WRKY_cls 234 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g00578 313 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 296 IPR044810 GO:0003700
Seca3g00578 313 Pfam Plant zinc cluster domain 189 232 IPR018872 -
Seca3g00578 313 MobiDBLite consensus disorder prediction 173 211 - -
Seca3g00578 313 MobiDBLite consensus disorder prediction 69 110 - -
Seca3g00578 313 Pfam WRKY DNA -binding domain 236 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g00578 313 FunFam WRKY transcription factor 65 218 295 - -
Seca3g00578 313 ProSiteProfiles WRKY domain profile. 229 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g00578 313 Gene3D WRKY domain 219 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g00578 313 MobiDBLite consensus disorder prediction 187 201 - -
Seca3g00578 313 MobiDBLite consensus disorder prediction 74 94 - -
Seca3g00578 313 SUPERFAMILY WRKY DNA-binding domain 232 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00578 Seca-Chr3 9044541 9046734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00578 1 312 WRKY Transcription Factor Family AT2G24570 62.006 1.23e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g00578 WRKY 6.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00578 - - gmx:100127394 419.853