Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00568 ATGTCGGTGCTCATCATTTTCAATATTCCCTTTTTACTACTATCTTTGTTGTGCTCAAGTCGAAGTGTCCTAGCGTCCCTTACTAGAGACTCTCAAATTTTGCTACACGTCAAGAACACCCAGCTTCATGATAAAAACAATAGCCTGAAAAACTGGGTGCAAAACACACACCACAACCCTTGTAACTGGACCGGCATTACCTGCGATGAACGAAACAAATCAATTGTCTCCATTAACCTCACTGACACTGGAATTCACGGCAATTTCCCCTCTGGTTTTTGTCGCATTCAAACCCTCCAAAATCTCTCCCTTTCAGGGAATTTTCTCGGCAATGCTATCTCCTCCCAAGCTCTGCTTCTCTGTTCCAAACTCCATCTCTTAAACATTTGCGACAACTTATTCATCGGAACCTTTCCAGACTTCACATCAGAGTTTTCTGAACTAAGAATATTGGATATCTCGCGCAACAACTTCTCGGGCGATATCACAACGAGTTTTTGCCGATTTCCAAAGCTGAGGGTGCTCGTTTTATCCGGAAACCTTCTTAGCGGAACAATCCCTCCTTGTTTTGGAAACCTCAGTGAGCTAATTCGATTAGAAATAGTTTTCAATCCCTTAAAACCAGGGCCTTTACCTTCTGAAATTGGGAACCTTTCTAAGCTAAAAACTCTGTATCTAAGCAGAGTAAATCTCATAGGGGAAATACCAGAGTCATTTGGGAACCTTATCTCTCTCAAGAATTTGGATTTGACTCATAACTCCTTATCAGGTAACATCCCAAATAACATTTCAGGCTTGAAAAACCTTGTGAACATTGAGCTTTACGATAATAACCTTTCTGGTGAAATTCCCCACGGTTTAGTAAACCTAAGCAATTTAATTCTCTTGGACCTTTCTCAGAATGCTCTCACTGGAAAATTGCCAGACATTTTCGCTTCATTGCCTCTTTCTACACTCAACTTGAATGATAACTTTCTTAAAGGAGAAGTTCCTGAAAGTTTAGCTTCAAACCCTAATTTGCATCGATTGAAACTTTTCAACAACAGCTTCACTGGGAAACTGCCACAGGATCTGGGGAGAAACACTGCTTTAGTTGATTTTGATGTATCAACGAATGATTTCACTGGTGAGTTGCCGAAATGCCTTTGTCAAAGGAACACGCTTGAGCGTCTTATCACATTCAAGAATCGATTTTCTGGAACTTTGCCTGATGAGTTAGGTGAGTGTTCTTCCCTTAACTATGTCAGAATTGAGAATAACCAACACTCTGGGTTGGTGCCACCGAAATTATGGAACCTTCCACGGCTTCAATATCTGCAAATGGAAAACAACAGGTTTGAAGGTTCCCTCTCTGCTTCCATTTCACATGCTCGTGGAATCAGCAAACTACTTTTATCCAATAACAAATTTTCTGGGCAGCTCCCAATTGGAATCTGTGAACTCGATCAGCTTGTTGAGATTGACGCCAGTAAGAATCAGTTTACTGGTGAAGTTCCCTTCTGCATAACCAGATTGAGGAAGTTGCTGAAGCTTAAGATGCAGGAAAACATGTTTTCTGGAGAGATTCCATGGAATGTGAGTTCTTGGACTTATTTGATTGAGTTGAACTTGTCGCATAATCGATTATCTGGTTCAATCCCATCGAAACTTGGTACTTTGCGAGATTTGATATACCTTGATCTTGCTTCTAATTCACTGACGGGGAAGATTCCTATGGAGTTAACGAATTTGACGCTTAACCAGTTTAACATCTCTGACAACAAATTGTATGGGGAGGTTCCTTCAGGTTTTAACCATGAAGTGTACTTGTCGGGTCTAATGGGTAACCCTGGTCTGTGTAGCTCGGTTATGAAATCCTTGCGTCCTTGTTCAAGACATAAACCCTTTTCTATGGTTGTTATAATCATATTAGGTGTTTGCATTGTGCTCCTTTTGGTGTCCCTGTTGTGGTTCTTCATGAAGAGAAAAATAGTTGCTTTTGCTGGCAAATCCAAGTGCTCTTTTATGACAACAATGTTTCAAAGAGTGGGGTTCAATGAGGAAGACATAGTACCTTTTTTAACCAACGAGAACGTGATTGGAAGGGGGAGTTCTGGTCAAGTGTACATGGTGAGGCTCAAAACAGGGCAAACAGTGGCAGTGAAAAAGCTCTGGGGTGGTGCACAGAAACCAGAAACGGAATTGGTGTTTAGGTCAGAGATTGAGACACTAGGGAGAATTAGGCATGTTAATATTGTGAAATTGTTATGTACTTGTAGTGGTGATGACTTCAGAATATTGGTGTATGAGTACATGGAGAATGGGAGCTTAGGTGATATGTTGCATCATGTGGACATGTGTGAGGAGTTAATGGATTGGACTAGACGGTTCAAAATTGCTGTGGGTGCGGCTCAAGGGTTGGCTTATTTACATCATGATTGTGTGCCAGCTATTGTTCACAGGGATGTAAAGAGTAATAACATATTGCTTGACCATGACTTTGTGCCTCGTGTAGCTGATTTTGGGCTAGCTAAGACACTACGGCACAATGTGAGTGAAGGTGTTATGTCTAGGATTGCTGGATCATATGGTTACATTGCCCCAGAGTATGCTTATACACTAAAAGTGACTGAGAAGAGCGATGTCTATAGTTTTGGTGTGGTGTTGATGGAATTGATCACTGGAAAGAGGCCAAATGACTCTTCCTTTGGTGAGAACAAAGACATGGTGAAGTGGGTCACTAAGACTGCTTTATCACCATCTCTTGAAAGAGGAAGTGGCAATATTGGAGGAGGTCACGATTGTGTTTTGACCAAAATTGTGGACCCAAGATTGAACCCATCCACTTGTGATTATGAAGAGATTGAGAAGGTTTTAAATGTAGCTTTACTTTGCACCTCAACATTTCCCATTAATAGGCCCTCAATGAGAAGGGTGGTTGAATTGCTCAAGGTTCATAAACTGGCTCGTCCCTAG 2955 0.4132 MSVLIIFNIPFLLLSLLCSSRSVLASLTRDSQILLHVKNTQLHDKNNSLKNWVQNTHHNPCNWTGITCDERNKSIVSINLTDTGIHGNFPSGFCRIQTLQNLSLSGNFLGNAISSQALLLCSKLHLLNICDNLFIGTFPDFTSEFSELRILDISRNNFSGDITTSFCRFPKLRVLVLSGNLLSGTIPPCFGNLSELIRLEIVFNPLKPGPLPSEIGNLSKLKTLYLSRVNLIGEIPESFGNLISLKNLDLTHNSLSGNIPNNISGLKNLVNIELYDNNLSGEIPHGLVNLSNLILLDLSQNALTGKLPDIFASLPLSTLNLNDNFLKGEVPESLASNPNLHRLKLFNNSFTGKLPQDLGRNTALVDFDVSTNDFTGELPKCLCQRNTLERLITFKNRFSGTLPDELGECSSLNYVRIENNQHSGLVPPKLWNLPRLQYLQMENNRFEGSLSASISHARGISKLLLSNNKFSGQLPIGICELDQLVEIDASKNQFTGEVPFCITRLRKLLKLKMQENMFSGEIPWNVSSWTYLIELNLSHNRLSGSIPSKLGTLRDLIYLDLASNSLTGKIPMELTNLTLNQFNISDNKLYGEVPSGFNHEVYLSGLMGNPGLCSSVMKSLRPCSRHKPFSMVVIIILGVCIVLLLVSLLWFFMKRKIVAFAGKSKCSFMTTMFQRVGFNEEDIVPFLTNENVIGRGSSGQVYMVRLKTGQTVAVKKLWGGAQKPETELVFRSEIETLGRIRHVNIVKLLCTCSGDDFRILVYEYMENGSLGDMLHHVDMCEELMDWTRRFKIAVGAAQGLAYLHHDCVPAIVHRDVKSNNILLDHDFVPRVADFGLAKTLRHNVSEGVMSRIAGSYGYIAPEYAYTLKVTEKSDVYSFGVVLMELITGKRPNDSSFGENKDMVKWVTKTALSPSLERGSGNIGGGHDCVLTKIVDPRLNPSTCDYEEIEKVLNVALLCTSTFPINRPSMRRVVELLKVHKLARP. 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00568 984 Gene3D Ribonuclease Inhibitor 27 185 IPR032675 -
Seca3g00568 984 FunFam Leucine-rich repeat receptor-like protein kinase TDR 315 625 - -
Seca3g00568 984 SUPERFAMILY L domain-like 396 613 - -
Seca3g00568 984 SUPERFAMILY RNI-like 77 423 - -
Seca3g00568 984 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Seca3g00568 984 FunFam receptor protein-tyrosine kinase CEPR1 670 764 - -
Seca3g00568 984 FunFam leucine-rich repeat receptor-like protein kinase TDR 765 984 - -
Seca3g00568 984 Gene3D Phosphorylase Kinase; domain 1 679 764 - -
Seca3g00568 984 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515
Seca3g00568 984 Gene3D Ribonuclease Inhibitor 186 285 IPR032675 -
Seca3g00568 984 Gene3D Ribonuclease Inhibitor 287 624 IPR032675 -
Seca3g00568 984 Pfam Leucine Rich Repeat 244 266 IPR001611 GO:0005515
Seca3g00568 984 SUPERFAMILY Protein kinase-like (PK-like) 687 977 IPR011009 -
Seca3g00568 984 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 68 314 - -
Seca3g00568 984 Gene3D Transferase(Phosphotransferase) domain 1 765 982 - -
Seca3g00568 984 ProSitePatterns Protein kinases ATP-binding region signature. 693 716 IPR017441 GO:0005524
Seca3g00568 984 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 339 977 - -
Seca3g00568 984 ProSiteProfiles Protein kinase domain profile. 687 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00568 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Seca3g00568 984 Pfam Protein kinase domain 689 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00568 984 SMART LRR_typ_2 169 192 IPR003591 -
Seca3g00568 984 SMART LRR_typ_2 433 456 IPR003591 -
Seca3g00568 984 SMART LRR_typ_2 290 313 IPR003591 -
Seca3g00568 984 SMART LRR_typ_2 242 266 IPR003591 -
Seca3g00568 984 SMART LRR_typ_2 218 241 IPR003591 -
Seca3g00568 984 SMART serkin_6 687 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00568 Seca-Chr3 8944203 8947582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00568 30 980 Receptor kinase-like Gene Family AT5G65710 55.062 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g00568 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00568 - - gmx:100813889 1400.96