Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00565 ATGTGTTACAGATCTGAAGGGAATAAGCTATTGATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGGGCCATGTGTTCAGAGATACTGCTAATACTAGAGATCGAAATGGTCAAGTATGCAGCCGCCTTGGCTGCAGCAGCAGAGTCAACTCTCCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAGGGAAAATCTTCGAGGTCTTCAATCCGATCCTCTCCAAATGGCAAGGAAGCAGTTGGAAGCTCCTCTAGAACTTTCTCCAGGACTAGTAACCCAGGAAAACCCCTTAAAAAGGCTCAGAAAACATTATCATCCCAGTTAGAGACAGATTCATCTGAAACTAGTAGGGTACAAGATGAACCAGAAGTTTCAAAGCTTGTCCCTACACCTGAAAAAATACAGAGAGGGCTTCAAGCTGAAATGGAAAACACAGAGTCAGGTAATGTCACACAGATGGAAGTAGGGAGCTCTAGTTTAGTATCTAATACAAGATCTCGGAGGAATTTTCATCCAAAGTCTGGATCACGTGCTCAAGAAATTCAAAGCACTGGGCCAGTGACACGTGCTGGCACCAGTAGGTATGGCTTAAGGAACCTCAAATGCAACTCTATTTCTGATGTCGTCCCTTCTGGTTGTCCACCATCAGATTCAACCCTTAACAGAAGGAAGGATATGATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCCACTGCTAGAGGTAAGAAGATGAGTGGGTCTTCAGTAGAAGGACGAAATTCTGGTTCCAGAAATGGCATATCTATCTCTGATTCAAGAATGTCTAGAAATACTCTTCACAGGGACAGGCCAGACAGCAACTTAGGGTCAGTTAGAACACGAAGATCAATTAGTGGTCTTGCCAGGGGAAGGCATTCTAGCCAAGGAAATGCTAATCCTGTGCCCCCCAATCGGTCCCTTGTCATGATACCTTCTTTTCCTCATTCTGGTAATTCTAATGCTCATGATGTATCACATCATACTTCTCTAGAGACTCCTTCAAGTCCAAGCTCTTACAGTAGACCAGGTACTAGTAGCGAGGAATTGTATGGTGTTATGCCTGTGTCTCCTGCAGAATATGGCATTACTCATTCTCTAATAAATCGAGATAGCCTTCGACGACGCTACAACATGGATGGAATTGCAGAGGTATTGTTGGCACTTGAGCGGATTGAACAAGATGTTGAGCTCACACATGAGCAAATTCTTTTACTGGAGTCCAACTTGTTCCTTACTGGATTAAACTTCTATGATCAGCACAGAGACATGCGATTGGACATTGATAACATGTCATATGAGGAACTGCTGGCTCTGGAAGAGAGGATGGGTAATGTGAGCACAGCTCTAACAGAGGAAGCTCTTTCAGAATGCCTTAAGAGAAGTTTCTATCAATCCTCACCCTCAGGCGAGGCAGCTGAGAGTTGCAATGAGGATAAGGATGATATCAAATGCAGTATCTGCCAGGAGGAATATGTGGTTGCAGATGAAGTGGGGAGTCTTCAATGCGAGCACATGTATCATGTGGTTTGCATACAGCAGTGGCTACGGCTGAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACCGTCAAGTTCATCTTCAACCCATTAA 1662 0.4398 MCYRSEGNKLLMDEYSGKRAIDGVVVPRKGMGHVFRDTANTRDRNGQVCSRLGCSSRVNSPKGAQIGSSEKGKSSRSSIRSSPNGKEAVGSSSRTFSRTSNPGKPLKKAQKTLSSQLETDSSETSRVQDEPEVSKLVPTPEKIQRGLQAEMENTESGNVTQMEVGSSSLVSNTRSRRNFHPKSGSRAQEIQSTGPVTRAGTSRYGLRNLKCNSISDVVPSGCPPSDSTLNRRKDMIKKRNCEGESSSTARGKKMSGSSVEGRNSGSRNGISISDSRMSRNTLHRDRPDSNLGSVRTRRSISGLARGRHSSQGNANPVPPNRSLVMIPSFPHSGNSNAHDVSHHTSLETPSSPSSYSRPGTSSEELYGVMPVSPAEYGITHSLINRDSLRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLTGLNFYDQHRDMRLDIDNMSYEELLALEERMGNVSTALTEEALSECLKRSFYQSSPSGEAAESCNEDKDDIKCSICQEEYVVADEVGSLQCEHMYHVVCIQQWLRLKNWCPICKASVAPSSSSSTH. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00565 553 ProSiteProfiles Zinc finger RING-type profile. 500 541 IPR001841 -
Seca3g00565 553 MobiDBLite consensus disorder prediction 213 364 - -
Seca3g00565 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 547 IPR013083 -
Seca3g00565 553 MobiDBLite consensus disorder prediction 230 246 - -
Seca3g00565 553 MobiDBLite consensus disorder prediction 52 122 - -
Seca3g00565 553 MobiDBLite consensus disorder prediction 149 199 - -
Seca3g00565 553 MobiDBLite consensus disorder prediction 278 292 - -
Seca3g00565 553 MobiDBLite consensus disorder prediction 247 277 - -
Seca3g00565 553 MobiDBLite consensus disorder prediction 213 227 - -
Seca3g00565 553 Pfam Ring finger domain 499 541 IPR001841 -
Seca3g00565 553 SUPERFAMILY RING/U-box 494 546 - -
Seca3g00565 553 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 75 545 IPR045191 GO:0061630
Seca3g00565 553 FunFam E3 ubiquitin-protein ligase arkadia 462 546 - -
Seca3g00565 553 MobiDBLite consensus disorder prediction 52 201 - -
Seca3g00565 553 SMART ring_2 500 540 IPR001841 -
Seca3g00565 553 MobiDBLite consensus disorder prediction 327 361 - -
Seca3g00565 553 MobiDBLite consensus disorder prediction 293 318 - -
Seca3g00565 553 Coils Coil 404 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00565 Seca-Chr3 8866037 8870850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00565 397 541 C3H Transcription Factor Family AT2G15530 45.205 1.63e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00565 - - gmx:100787213 809.29