Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00561 ATGATTACTGGTGATCAGCTTGCCATTGCCAAGGAAACTGGCCGAAGGCTGGGGATGGGAACAAACATGTACCCATCTTCCTCATTGCTTGGCCAAAGTAAGGATGCTTCTGTTTCAGCTCTTCCAGTTGATGAGTTGATTGAAAAGGCTGATGGATTTGCTGGAGTATTTCCTGAACACAAATATGAAATCGTTAAGAGGTTGCAAGAGAGGAAGCATATATGTGGAATGACAGGTGATGGTGTCAACGATGCCCCTGCATTAAAGAAAGCAGATATTGGAATTGCAGTTGCTGACGCTACAGATGCTGCTAGAAGTGCTTCTGACATTGTCCTCACTGAACCTGGTCTGAGTGTCATTATTAGTGCTGTGCTCACCAGCAGGGCGATTTTCCAAAGGATGAAAAACTATACGATCTATGCTGTGTCAATCACCATTCGTATTGTGTTTGGCTTCATGTTTATTGCCTTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTGTTGATTATTGCAATACTAAATGATGGTACCATTATGACAATATCCAAGGATAGAGTGAAACCATCTCCACAGCCCGACAGCTGGAAGCTGAGAGAGATATTTGCTACTGGTGTTGTGCTAGGTAGTTACATGGCACTGATGACAGTAGTATTTTTCTGGCTCATGAAGGATACCGACTTCTTCTCGGACAAGTTTGGTGTGAGGTCCCTGAGAAATAGTCCTGAAGAAATGATGGCAGCCTTGTACCTACAAGTCAGTATTATAAGTCAGGCCCTTATTTTTGTTACTCGGTCCCGCAGCTGGTCCTATGTTGAAAGACCTGGTCTTCTCCTACTTGGTGCTTTTTTTATTGCTCAGCTGGTAGCAACTTTTCTAGCAGTATATGCTAATTGGGCCTTTGCAAGAATTAAGGGAATGGGCTGGGGATGGGCTGCTGTAATCTGGCTGTACAGTCTAGTGACATATATCCCTCTTGATATACTCAAATTCACAATCCGCTATGTTCTAAGTGGGAAGGCTTGGGATAATCTTTTGGAGAACAAGACTGCCTTCACTACAAAGAAGGACTATGGCAAAGAAGAGAGAGAAGCACAGTGGGCAACTGCACAGAGGACTCTTCATGGTCTTCAGCCACCTGAAACAACCAGTATTTTCAATGACAAGAATAGCTATAGGGAACTTTCAGAGATTGCTGAGCAAGCCAAGAGACGTGCTGAGGTTGCGAGGCTTAGGGAGCTTCATACTCTAAAGGGGCACGTTGAGTCAGTGGTGAAGCTAAAGGGACTTGACATTGATACAATCCAGCAACACTATACGGTTTAA 1326 0.4397 MITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDASVSALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLREIFATGVVLGSYMALMTVVFFWLMKDTDFFSDKFGVRSLRNSPEEMMAALYLQVSIISQALIFVTRSRSWSYVERPGLLLLGAFFIAQLVATFLAVYANWAFARIKGMGWGWAAVIWLYSLVTYIPLDILKFTIRYVLSGKAWDNLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQPPETTSIFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00561 441 PRINTS H+-transporting ATPase (proton pump) signature 50 66 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g00561 441 PRINTS H+-transporting ATPase (proton pump) signature 78 94 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g00561 441 PRINTS H+-transporting ATPase (proton pump) signature 250 271 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g00561 441 PRINTS H+-transporting ATPase (proton pump) signature 109 134 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g00561 441 SUPERFAMILY Calcium ATPase, transmembrane domain M 127 337 IPR023298 -
Seca3g00561 441 FunFam Plasma membrane ATPase 1 126 - -
Seca3g00561 441 FunFam ATPase 4 plasma membrane-type 62 305 - -
Seca3g00561 441 Gene3D - 1 115 IPR023214 -
Seca3g00561 441 Gene3D - 116 305 - -
Seca3g00561 441 Gene3D - 390 441 - -
Seca3g00561 441 PANTHER CALCIUM-TRANSPORTING ATPASE 1 373 - -
Seca3g00561 441 NCBIfam HAD-IC family P-type ATPase 53 168 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca3g00561 441 Pfam haloacid dehalogenase-like hydrolase 2 92 - -
Seca3g00561 441 Coils Coil 392 412 - -
Seca3g00561 441 SUPERFAMILY HAD-like 1 124 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00561 Seca-Chr3 8772376 8777367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00561 1 441 Primary Pumps ATPases AT2G24520 88.435 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00561 K01535 - gmx:100785442 827.78