Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00557 ATGTTCTCTTCCTCTACGCACTTCGACGCAACCTCCGCCTTCTCCGGCGGCGGATTCATGACCACTCAGGCCACCGATTCCTCACCAGCTCCCCAAAAAAGTCGCGATACTCAGGGTTTGGTTGCAGTTACAGTAAAGCAGATAAGTGAGGCTTCTCACTCTGGTGATGAAAAGTCGAATTTCCTAATCAATGGAGTGAATGTGAGCAATGTAACCTTGGTTGGGATGGTGTTTGAGAAAGCTGAGAGAAACACTGATGTTAATTTTGTTTTGGATGATGGAACAGGACGAATCAAATGTCGGAGATGGGTTAATGAGACTTTTGACACAAAGGAAATGGAGGAAATACAAGATGGTATGTATGTTCACCTTTATGGGCATTTGAGGAGCTTTCAAGGTGTAAGGCAGCTCGTTGCCTTCTCTGTGAGGCCTGTGACGAATTTTGATGAGATATCTTTTCACTTCATTGATTGCATACATAACCATCTCCATTCCAAAGTTAAGGTTGAAGGAGTCACTCCTGCAAATCCTCCATCATTAGGCTCGTCTTTGAACACTCCTGCCAGAAATGCATCAGATGGATATCAAGCACCATCGTCAAATCAGCCATATGCGCAATATAGTGTGGATGGACTCAAAGATTGTGATAAATTGGTTCTTGGCTATCTACAGCAGCACTCAGACATGTCAGATGAAAGGGGAATACATGTTGATGAACTATCTCGACAGCTTAAACTTCCATTGGATAAGATCATGTTATCCCTCAAGATTCTTGGAGATGACGGATTGGTATACTCCACCATCGATGACTTTCATTACAAGAAAGCTTGA 831 0.432 MFSSSTHFDATSAFSGGGFMTTQATDSSPAPQKSRDTQGLVAVTVKQISEASHSGDEKSNFLINGVNVSNVTLVGMVFEKAERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEIQDGMYVHLYGHLRSFQGVRQLVAFSVRPVTNFDEISFHFIDCIHNHLHSKVKVEGVTPANPPSLGSSLNTPARNASDGYQAPSSNQPYAQYSVDGLKDCDKLVLGYLQQHSDMSDERGIHVDELSRQLKLPLDKIMLSLKILGDDGLVYSTIDDFHYKKA. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00557 276 SUPERFAMILY "Winged helix" DNA-binding domain 210 274 IPR036390 -
Seca3g00557 276 Gene3D - 32 166 IPR012340 -
Seca3g00557 276 PIRSF RPA32 2 276 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g00557 276 MobiDBLite consensus disorder prediction 174 200 - -
Seca3g00557 276 FunFam Replication protein A 32 kDa subunit 207 276 - -
Seca3g00557 276 PANTHER REPLICATION PROTEIN A-RELATED 8 274 IPR040260 -
Seca3g00557 276 CDD RPA2_DBD_D 70 163 - -
Seca3g00557 276 Gene3D - 206 276 IPR036388 -
Seca3g00557 276 Pfam OB-fold nucleic acid binding domain 71 143 IPR004365 GO:0003676
Seca3g00557 276 FunFam replication protein A 32 kDa subunit A-like 33 167 - -
Seca3g00557 276 SUPERFAMILY Nucleic acid-binding proteins 40 164 IPR012340 -
Seca3g00557 276 MobiDBLite consensus disorder prediction 176 200 - -
Seca3g00557 276 Pfam Replication protein A C terminal 182 270 IPR014892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00557 Seca-Chr3 8703348 8708830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00557 1 274 Core DNA Replication Machinery Family AT2G24490 47.535 2.61e-85 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00557 K10739 - gmx:100802512 425.246