Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00528 ATGTCGCTGCAAGCTCTTGTTAGAAGACGTTCAAGTGGCGAAATAAGGAACTTGACCACAGTTTCCAGCAGCCTCTTACCAGCATTTGGCACTACCACTGATGAACGTTACTTGAATCTAAAAAAATATGTCATCGCTCCCTATGATCGCAGATATCGTTTGTGGCAAACGTTCCTAGTGGCATTGGTGGTGTACTCAGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAGAAATGTCTATTGGGCCACTGTTGATTGCTGATCTCGTTGTAGATGTCTTCTTTGCTGTTGATATAGTCCTAACTTTCTTTGTGGCTTACTTGGATAAATCAACTTATTTCCTCGTTGATAACCATAAGAAGATTGCTATCAGGTATGTCAAAAAGTTACACTTTGCCATGGATGTGGCCTCCACTATGCCGTTTCAGCAGATATACCAAATTATAACAGGCAAACCACACAGAAACGAGTTCTTTGCTTTCCTAAATTTGCTTAGACTCTGGCGATTGAGGCGTGTTAGCCAACTCTTCTCAAGGATAGAGAAAGACACACGAATTAGCTACTCGGTAGCAAGGTTTTCTAAACTTATATGCGTTACGCTATTTGCAGTGCACTCTGCAGGCTGCATGTATTTTTGGTTGGCTGTTCATCACAAGACACCCGGAAACACATGGATCGGGAAACAAGTAGAGGATTTTAAACATAGGAGCATCTCGTTGGGTTACACTTATTCCATGTACTGGTCTATTGTAACCCTTACTACTGTTGGCTATGGAGATTTACATGCAGAAAATACTACGGAGAAGGCTTTCAATATTTTATATATGCTGTTTAACATCGGCCTCACTGCATATATAATCGGAAACATGACAAATCTTGTGGTTCATAGCTCTATCCGAACCATTGCCATGAGGGATGCCTTCAACAAAATGTTACAATATGCAAGCAAAAGTAGACTCCCAGAAGGTTTGAAGGAGCAAATGTTAGCACACTTACAGTTGAAGTTTAAGACAGCAGAGTTACAGCAAGAAGAAGTGCTACAGGGCCTGCCTAAAGCAATTAGATCCAGTATTGCTCAACATCTTTTCCACAACATAGTTGCAAATGCATATTTATTTAACGGAGTCTCTGATGATTTTGTCACCCAGCTGGTGTCAGAAATGAAAGCAGAATACTACCCATCTAAGGTTGACATCGTCCTGCAAAATGAGGTGCCAGCATATTTCTACATTTTAGTCTCTGGATCAGTGGATGTGTTGATATACAAGAATGGATCCGAAAAGGTAAGATGGAATCTCCCATAA 1305 0.4107 MSLQALVRRRSSGEIRNLTTVSSSLLPAFGTTTDERYLNLKKYVIAPYDRRYRLWQTFLVALVVYSAWASPFELAFREMSIGPLLIADLVVDVFFAVDIVLTFFVAYLDKSTYFLVDNHKKIAIRYVKKLHFAMDVASTMPFQQIYQIITGKPHRNEFFAFLNLLRLWRLRRVSQLFSRIEKDTRISYSVARFSKLICVTLFAVHSAGCMYFWLAVHHKTPGNTWIGKQVEDFKHRSISLGYTYSMYWSIVTLTTVGYGDLHAENTTEKAFNILYMLFNIGLTAYIIGNMTNLVVHSSIRTIAMRDAFNKMLQYASKSRLPEGLKEQMLAHLQLKFKTAELQQEEVLQGLPKAIRSSIAQHLFHNIVANAYLFNGVSDDFVTQLVSEMKAEYYPSKVDIVLQNEVPAYFYILVSGSVDVLIYKNGSEKVRWNLP. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00528 434 SUPERFAMILY Voltage-gated potassium channels 47 294 - -
Seca3g00528 434 Gene3D - 53 296 - -
Seca3g00528 434 PRINTS EAG/ELK/ERG potassium channel family signature 65 72 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00528 434 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00528 434 PRINTS EAG/ELK/ERG potassium channel family signature 268 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00528 434 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00528 434 PRINTS EAG/ELK/ERG potassium channel family signature 242 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00528 434 PRINTS EAG/ELK/ERG potassium channel family signature 286 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g00528 434 CDD CAP_ED 372 429 IPR000595 -
Seca3g00528 434 Gene3D Jelly Rolls 339 431 IPR014710 -
Seca3g00528 434 FunFam Potassium channel KAT3 54 296 - -
Seca3g00528 434 Pfam Ion transport protein 53 293 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g00528 434 SUPERFAMILY cAMP-binding domain-like 301 426 IPR018490 -
Seca3g00528 434 ProSiteProfiles cAMP/cGMP binding motif profile. 372 434 IPR000595 -
Seca3g00528 434 PANTHER POTASSIUM CHANNEL AKT1 19 428 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00528 Seca-Chr3 8392442 8396597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00528 8 429 Ion Channels AT4G32650 63.507 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00528 K21867 - gmx:100794620 649.432