Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00519 ATGGCTGCTGGTTATGATCTTATTAAGAGTCTGTATCCTGGGAGACAGAATTGGAGGCTGAAGGTTAGGGTTGTCCGTGTGTGGGATATGTCGCCCGTTGATCAGCCATCACAACCATTTGCTATTGAGATGGTTCTTATTGACTCGGAGGGCAACCGGATTCAAGCATCAATAAGGAAGCCGATGATAAGGCGGTTCAGAGGTGTCGTTGAAGAGGGACAAATTTATCGAATGTCGTACTTTGGCATAGTGAAAAACACGGGATCATTCAGGGCTGCCCATCATGAGTATAAACTGCTTTTTCATGGAAGAACTCGTGTGATACCTTGCGAGGGACTGTCAATGCCGTTGCATGGCCTGTCCTTGATGAAAACCGATGCAATTTACCAAACGGATGGGCAATCTGAATATTTAGTTGGTAATTTGTTATATGGGTCAAACATGATAGGATTGCTGACTGCTGTGTCGACCGAGAAGTTGTCCGTGAGGGATGGTCGGACCACGAGGCATATTGTTATGGAACTCACTGATGATAAGGGTAAGATTCAGTGTACTATGTTTGGCCACTATGTTGACCTGATCAAGGAAAGTCTGGATAGTTCTGGCTGTGTTGTCCTGCAGAATGTGATGAATACATCAAGGGTGATTTGGAGTCCTCAGATTCCAGAGGCGGTTGAGTTTAAGGATCGCATGATTGCATGTGGGTTCGATGAGACTGACACCATTGGGGTGGTGGACGACTCTCACAAGGAGGTGTCCCTCAATGACGACTTCCTGGCGATGTCCCCGCGAAAGACTATCAGTGAGCTGCACTCAACTGAAGAGGAGGGTAGCTTCGTTGTGCTTGCGACGATTGCTGCTGTGTTGATTGATGACACCTGGTGGTATAAAGCATGCAAATGCATGAAAGCTGTAGGCGATGCAGATGGGAAGCCGTTTTGTCAGTCGTGCTGCATGACTGTGGACAATATTACTCCGAGATATAAGCTGAGGGTAGAGACTTTTGATGGGGGTGATACTGCTGCTTTTATCTTATTTGACTCCGATTCAAGGTTCTTGCTTGGGAAACCATGTTCACACTTTGTGTCACCCAGTGAGGCTAAGTTTGTGCCCCTATTTCCAACGATGGATTCGTCGTCCTCCGATCTTAATTGTGCGAGGAATGTGAATGAAATCGTTGATCTCGCTGCTGATGCATCTGAGGCGACTGTATGCCTTGATGACAAAGGTTGTGGTTCAGTTCAAACAAGGACTGGGCAAAAGGTGTTGACTGAGGAAGCTAGCGGTGGCAAGAAGCGAGGTGGCAAGCTTCGCAAGATTAAGCTGGAGGATGCATAA 1338 0.4701 MAAGYDLIKSLYPGRQNWRLKVRVVRVWDMSPVDQPSQPFAIEMVLIDSEGNRIQASIRKPMIRRFRGVVEEGQIYRMSYFGIVKNTGSFRAAHHEYKLLFHGRTRVIPCEGLSMPLHGLSLMKTDAIYQTDGQSEYLVGNLLYGSNMIGLLTAVSTEKLSVRDGRTTRHIVMELTDDKGKIQCTMFGHYVDLIKESLDSSGCVVLQNVMNTSRVIWSPQIPEAVEFKDRMIACGFDETDTIGVVDDSHKEVSLNDDFLAMSPRKTISELHSTEEEGSFVVLATIAAVLIDDTWWYKACKCMKAVGDADGKPFCQSCCMTVDNITPRYKLRVETFDGGDTAAFILFDSDSRFLLGKPCSHFVSPSEAKFVPLFPTMDSSSSDLNCARNVNEIVDLAADASEATVCLDDKGCGSVQTRTGQKVLTEEASGGKKRGGKLRKIKLEDA. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00519 445 Pfam Replication factor-A C terminal domain 281 361 IPR013955 -
Seca3g00519 445 Pfam Domain of unknown function DUF223 43 130 IPR003871 -
Seca3g00519 445 Gene3D - 115 240 IPR012340 -
Seca3g00519 445 PANTHER OS03G0429900 PROTEIN 5 377 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca3g00519 445 CDD RPA1_DBD_A_like 19 107 - -
Seca3g00519 445 Gene3D - 255 381 IPR012340 -
Seca3g00519 445 SUPERFAMILY Nucleic acid-binding proteins 147 231 IPR012340 -
Seca3g00519 445 SUPERFAMILY Nucleic acid-binding proteins 263 363 IPR012340 -
Seca3g00519 445 CDD RPA1_DBD_C 265 358 IPR047192 -
Seca3g00519 445 Gene3D - 7 112 IPR012340 -
Seca3g00519 445 SUPERFAMILY Nucleic acid-binding proteins 4 115 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00519 Seca-Chr3 8301216 8303742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00519 10 355 Core DNA Replication Machinery Family AT5G08020 24.538 8.33e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00519 - - lja:Lj6g3v0884310.1 308.145