Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g00516 | ATGCACGCCAAATCGGCACAATCATCATTTCGGGATCGGACGCAGGAATTCCATAGCATCGCGGAAAGGTTGAAGAAATCAACATCAGGATCAAATGGACCGAGCAGCAGTAGTGGTGCTAGTTCATCCAGATCGGAGGAACAACGATCTGCTGTTGCAATTCAATCAGAGTTCAATAAAAGGGCTTCCAAGATTGGCTATGGGATTCACCAAACATCTCAAAAGCTTGCTAAGCTCGCCAAGTTGGCAAAAAGAACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACAAGTGTTATTAAGCAAGATATTACTGCATTGAACTCTGCGGTTGTGGATCTTCAGCTACTCAGCAACTCTAGAAATGAGAGTGGAAATGTATCTGCCGACACAACTAGCCATTCGACCACGGTTGTGGATGACCTAAAGACCCGATTGATGAGCACAACAAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACATGAAAGTACATGAGAGTAGAAGACAGTTGTTTTCGTCCTCTGCTTCTAAGGATTCTGCAAATCCTTTTGTCCGTCAACGTCCATTAGCTACAAGGACGGCTGCTAGTGCTTCTGATGCCCCTGCACCCCCGTGGGCTACTGGATCACCATCTTCATCTCAGTTGTTTCCCAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAATATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATATTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCGTAG | 1041 | 0.4419 | MHAKSAQSSFRDRTQEFHSIAERLKKSTSGSNGPSSSSGASSSRSEEQRSAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNVSADTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENMKVHESRRQLFSSSASKDSANPFVRQRPLATRTAASASDAPAPPWATGSPSSSQLFPKKQVDGESQPLLQQQQQQQQQQQQQVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA. | 347 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g00516 | 346 | MobiDBLite | consensus disorder prediction | 170 | 189 | - | - | |
| Seca3g00516 | 346 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
| Seca3g00516 | 346 | CDD | SNARE_syntaxin5 | 257 | 335 | - | - | |
| Seca3g00516 | 346 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 7 | 26 | IPR021538 | - | |
| Seca3g00516 | 346 | Gene3D | - | 53 | 309 | - | - | |
| Seca3g00516 | 346 | Pfam | SNARE domain | 290 | 342 | IPR000727 | - | |
| Seca3g00516 | 346 | MobiDBLite | consensus disorder prediction | 173 | 187 | - | - | |
| Seca3g00516 | 346 | MobiDBLite | consensus disorder prediction | 24 | 54 | - | - | |
| Seca3g00516 | 346 | MobiDBLite | consensus disorder prediction | 196 | 251 | - | - | |
| Seca3g00516 | 346 | MobiDBLite | consensus disorder prediction | 211 | 251 | - | - | |
| Seca3g00516 | 346 | ProSitePatterns | Syntaxin / epimorphin family signature. | 260 | 299 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Seca3g00516 | 346 | SMART | tSNARE_6 | 249 | 316 | IPR000727 | - | |
| Seca3g00516 | 346 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Seca3g00516 | 346 | SUPERFAMILY | t-snare proteins | 56 | 309 | IPR010989 | GO:0016020|GO:0016192 | |
| Seca3g00516 | 346 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 254 | 316 | IPR000727 | - | |
| Seca3g00516 | 346 | PANTHER | SYNTAXIN | 55 | 338 | IPR045242 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g00516 | Seca-Chr3 | 8245267 | 8257727 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g00516 | 1 | 346 | SNARE and Associated Proteins | AT3G24350 | 67.218 | 1.27e-151 | 429 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g00516 | K08490 | - | gmx:100811494 | 495.738 |