Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00512 ATGGGTGTGGATTACTATAATATATTGAAGGTGGATAGAAATGCTACCGAGGATGATTTGAAGAAAGCATATAGAAAATTGGCCATGAAATGGCACCCTGATAAGAACCCCACCAACAAAAAAGAAGCTGAAGCCAATTTCAAGCAGATCTCTGAGGCCTATGATGTGTTGAGTGATCCTCAGAAAAGGGCAATTTATGATCAACATGGAGAGGAAGGGTTGAAAGATAGGCCACCACCTGATAGTGAACCATCAGGTGGGTTTAATCCCAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTGGATCATCTGGACCAGGCAAGTCCAAGAGATTTTCCTCTGATGGAGGGGGAGCTTTTAATGGATTTGGTGGAAATGAAAATATTTTTAGAACATATAGTGAACGTGGGAATATGCTAAAGAAGCCCCCACCTGTTGAGACCAAATTGCCTTGCAGTTTGGAGGAGTTATATTCTGGATCTACAAGGAAAATGAAAATCTCAAGGACTGTAATAGATGCCAATGGAAGGCCATGTCCAGAAACAGAGATATTAACCATTGAAGTGAAGCCGGGTTGGAAGAAAGGGACCAAGATTACCTTCCCAGATAAAGGGAATCAGCAACCAAATCAACAGGCAGCAGACCTTGTATTTGTGATTGATGAGAAGCCTCATGATTTGTTCAAACGAGATAGCAATGACCTCATTGTGAGCCAAAGGGTGTCACTAGCAGAGGCTATTGGAGGAACTTCAATAAATCTCAAAACACTTGATAACCGTAGTTTATGTATCCCAGTGACTGATATTGTGAGTCCTGGTTATGAGCTGGTTGTTGCAAATGAAGGAATGCCAATAACAAAAGAGCCTGGTCATAGGGGTGACTTGAGGATCATATTTGAGGTTAAGTTCCCTACAAGATTGACTTCAGAGCAAAGAGCAGGACTAAAGCGAGCATTGGGAGGAGGAGGAGGAGGAGGAGCTTGA 1005 0.4219 MGVDYYNILKVDRNATEDDLKKAYRKLAMKWHPDKNPTNKKEAEANFKQISEAYDVLSDPQKRAIYDQHGEEGLKDRPPPDSEPSGGFNPRNAEDIFAEFFGSSPFGFGSSGPGKSKRFSSDGGGAFNGFGGNENIFRTYSERGNMLKKPPPVETKLPCSLEELYSGSTRKMKISRTVIDANGRPCPETEILTIEVKPGWKKGTKITFPDKGNQQPNQQAADLVFVIDEKPHDLFKRDSNDLIVSQRVSLAEAIGGTSINLKTLDNRSLCIPVTDIVSPGYELVVANEGMPITKEPGHRGDLRIIFEVKFPTRLTSEQRAGLKRALGGGGGGGA. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00512 334 MobiDBLite consensus disorder prediction 69 90 - -
Seca3g00512 334 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Seca3g00512 334 FunFam DNAJ heat shock family protein 231 326 - -
Seca3g00512 334 Gene3D - 152 230 - -
Seca3g00512 334 CDD DnaJ 4 59 IPR001623 -
Seca3g00512 334 FunFam DnaJ subfamily B member 13 3 111 - -
Seca3g00512 334 Pfam DnaJ domain 4 67 IPR001623 -
Seca3g00512 334 Pfam DnaJ C terminal domain 153 311 IPR002939 -
Seca3g00512 334 Gene3D - 232 312 - -
Seca3g00512 334 SUPERFAMILY Chaperone J-domain 3 110 IPR036869 -
Seca3g00512 334 PRINTS DnaJ domain signature 62 81 IPR001623 -
Seca3g00512 334 PRINTS DnaJ domain signature 6 24 IPR001623 -
Seca3g00512 334 PRINTS DnaJ domain signature 42 62 IPR001623 -
Seca3g00512 334 PRINTS DnaJ domain signature 24 39 IPR001623 -
Seca3g00512 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 235 320 IPR008971 GO:0006457|GO:0051082
Seca3g00512 334 FunFam Dnaj homolog subfamily b member 148 230 - -
Seca3g00512 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 152 233 IPR008971 GO:0006457|GO:0051082
Seca3g00512 334 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 326 - -
Seca3g00512 334 CDD DnaJ_C 151 314 - -
Seca3g00512 334 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Seca3g00512 334 Gene3D DnaJ domain 3 112 IPR036869 -
Seca3g00512 334 SMART dnaj_3 3 62 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00512 Seca-Chr3 8180087 8182297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00512 5 151 C2H2 Transcription Factor Family AT1G74250 32.680 1.38e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00512 K09510 - gmx:100796426 520.39