Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00505 ATGGACCTTGTCTTATCTCATCCTCAACCTGAAGAAGAAGAAGAAGATACTTACCCTTTGTTAATGGCTCGCCCCACTCATCATGTCATTGATATAACACCGAGTACTTCTGAACCTTCCACTTCTACCTATAACAATAATGGTAGATTGCCGGTTTCTCAGCCTTCAAATTCTTCTTCTAGGATGAGAAGAGGGAATTCATCACGTGGGCAAAGGAGTTCATTGAATTCAGGGGTATGGATATCTATTGAGCTTCTCCTTACACTTAGTCAGATTGTTGCTTCTGTGCTTGTTTTGTCTCTATCAAGGCATGAGCATCCGCGTACACCATTGTTTGCTTGGATTGTTGGTTATGCATCTGGATGTGTTGCTTCCCTCCCTTTACTCTATTGGCGATATTATCATAATAACCGTGCACGAGACCAGGATTCATCTCAAACCTCTCCTCGAATTGATGATCCTTCAGGGATACTTCTTAACAGTTCCATGACAAATGGAGGAGGAGGAGATGTTAATTCTTCTTCTGCTGCTGCTGCATCGGCATCCTCTACAAGCCATCAAGCTTCATGGTTGATGAATGCAAGGCTGAAACTACTCGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTCGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTAATGAAGCTCCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTTAGTTGTATCGGTTATGCTATGCCCTTCATTTTATGTGCAACAATCTGCTGCTGTCTGCCTTGTATAATTTCCATCCTTGGGATTAGAGAGGATCCAATACAAACTCAAGGTGCAACCTCTGAAACCATTAATGCTCTACCAACTTACAAGTTCAAAATGAAGAAAAATAAAAGCAAGGATGAAAGCAACTCAGCTGTCAGTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAGGAACGTATGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTAGCGAAATATGAAAATAACGATGAGCTGAGGGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGTGTGGACAAGTGGTTGAAGATAAATGCCTTATGCCCCCTTTGCAAGAGTGAGATTGGTGAGAACGTAACAGGATCAGTCTCTGGGGAGGATGCGAACCAACAACAGGGTGAGAACAGGGTTGAAAATGGCCTCTCCAATACCTCATCATAA 1230 0.4195 MDLVLSHPQPEEEEEDTYPLLMARPTHHVIDITPSTSEPSTSTYNNNGRLPVSQPSNSSSRMRRGNSSRGQRSSLNSGVWISIELLLTLSQIVASVLVLSLSRHEHPRTPLFAWIVGYASGCVASLPLLYWRYYHNNRARDQDSSQTSPRIDDPSGILLNSSMTNGGGGDVNSSSAAAASASSTSHQASWLMNARLKLLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSANEAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGIREDPIQTQGATSETINALPTYKFKMKKNKSKDESNSAVSEGGIVAAGTEKERMISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEIGENVTGSVSGEDANQQQGENRVENGLSNTSS. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00505 409 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Seca3g00505 409 SUPERFAMILY RING/U-box 326 381 - -
Seca3g00505 409 FunFam E3 ubiquitin-protein ligase 317 383 - -
Seca3g00505 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 383 IPR013083 -
Seca3g00505 409 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 26 378 - -
Seca3g00505 409 SMART ring_2 334 374 IPR001841 -
Seca3g00505 409 MobiDBLite consensus disorder prediction 31 74 - -
Seca3g00505 409 MobiDBLite consensus disorder prediction 385 409 - -
Seca3g00505 409 Pfam Ring finger domain 334 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00505 Seca-Chr3 8149207 8153572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00505 53 385 C3H Transcription Factor Family AT1G80400 54.925 7.27e-138 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00505 - - gmx:100795904 579.326