Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00503 ATGAAAAAAGCAAATACATTTTGTGCCAAAGAGGAAGGGCGTCCACTTCGGATCACTAGAGCAAGGGCTAGAGCCTTGGGAGGGATTCCGCCCTATTCAAGACCGTCCTTCAACAATGACCAGAAAAACTTGGTTAGACCCAAAAGAGCAGCAGCTTCTGAGAACAATTCTTCTTTGGTTGTTCCTGATGGTGCCCTTCAGCATCATAAGAGAAGGGCAGTTCTTACAGATGTAACAAACATGTGCACAAAGCCACATGATAAATATATTAAAGCATCACAATTTCAGGCAAGAGGAGTTTGCAGAAAGAAAGACACAAAGTTAGCTTCAGATGTCTCCATTGAAGTTTCATCATCGCAACAGGATGTAAGAGCAAAGTTAACAGAAGAACTATCCACAATAAGGATGGTAGAGTCAAATGACACCATTGCTGCAGCAACTTTGGTTGACAAAGAGCCAAAAGAACATTGTATGTCCAACAGCATAAGAGAACATGTTATAGAAGATACCGCACATTCAACACAAGAATCTGTGCAATCTGATGAACTCTTGATCTCTCCAAACAAAGATATAGAAGTGATTTGTGAGAAGCTAGGAGCCTCAGATTGCCTGGCCATTGTGGACATAGATTCAGAGTTAAAGGATTCTCAAATTTGGAGTTCTTATGCCCCTGATATATACAACAAAAATCGAGTCACAGAGATTGAAAGGAAACCATTAGCCCACTACATGGATAAGTTGCAGCAAGATATCACTCCAAACATGCGCGGAATTCTGATAGATTGGCTAGTGGAGGTTTCTGAGGAATATAATTTGGTTCCAGACACTCTTTACCTGACAGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGGTTCAGAAACAAAGGCTCCAGTTGGTTGGTGTTACTTGCATGCTGGTTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAGGAATTTTGCTTCATCACAGATAACACATACACAAAAGAAGAGGTATTGAAAATGGAGAGTGAAGTTCTAAACCTCTTGCATTTTCAGTTATCTGTTCCCACAGCTAAAACATTTCTCAGGAGATTTATCCAGGCAGCACAATCATCATACAAGGTTCCTCGTGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTCACTCTTGTTGAGTACAGCTTCTTGCAGTTTCTACCTTCCCTAGTGGCTGCTTCTGCTGTGTTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCCTGGAATCCAACTCTGGAGCATTATACAAACTACAAAGCTTCACAGCTCAAAACTGTTGTTCTTGCCCTGGAAGATCTGCAACTTAACACCAAAGGCTGTTCCCTGAATGCTATACGTGAGAAATATAAACAACAGAAGTTCAATTGTGTGGCAAAACTGTCTCCAAAACCAGTGCAGTCACTCTTCCAGGTTCAAGTGTAA 1464 0.416 MKKANTFCAKEEGRPLRITRARARALGGIPPYSRPSFNNDQKNLVRPKRAAASENNSSLVVPDGALQHHKRRAVLTDVTNMCTKPHDKYIKASQFQARGVCRKKDTKLASDVSIEVSSSQQDVRAKLTEELSTIRMVESNDTIAAATLVDKEPKEHCMSNSIREHVIEDTAHSTQESVQSDELLISPNKDIEVICEKLGASDCLAIVDIDSELKDSQIWSSYAPDIYNKNRVTEIERKPLAHYMDKLQQDITPNMRGILIDWLVEVSEEYNLVPDTLYLTVNLIDRFLSTSLVQKQRLQLVGVTCMLVASKYEEICAPRVEEFCFITDNTYTKEEVLKMESEVLNLLHFQLSVPTAKTFLRRFIQAAQSSYKVPRVELEFLANYLAELTLVEYSFLQFLPSLVAASAVFLARWTLNHSEHPWNPTLEHYTNYKASQLKTVVLALEDLQLNTKGCSLNAIREKYKQQKFNCVAKLSPKPVQSLFQVQV. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00503 487 Pfam Cyclin, N-terminal domain 225 352 IPR006671 -
Seca3g00503 487 SMART cyclin_7 358 446 IPR013763 -
Seca3g00503 487 SMART cyclin_7 261 345 IPR013763 -
Seca3g00503 487 Gene3D - 225 473 - -
Seca3g00503 487 SUPERFAMILY Cyclin-like 353 476 IPR036915 -
Seca3g00503 487 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Seca3g00503 487 SMART Cyclin_C_2 354 477 IPR004367 -
Seca3g00503 487 ProSitePatterns Cyclins signature. 256 287 IPR006671 -
Seca3g00503 487 Gene3D - 239 352 - -
Seca3g00503 487 FunFam Mitotic cyclin 6 239 339 - -
Seca3g00503 487 PIRSF Cyclin_A_B_D_E 33 486 IPR046965 GO:0016538|GO:0044772
Seca3g00503 487 PANTHER CYCLINS 175 469 IPR039361 -
Seca3g00503 487 Pfam Cyclin, C-terminal domain 354 476 IPR004367 -
Seca3g00503 487 SUPERFAMILY Cyclin-like 215 351 IPR036915 -
Seca3g00503 487 FunFam Cyclin A1 341 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00503 Seca-Chr3 8134515 8139174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00503 2 483 Core Cell Cycle Gene Families AT5G25380 51.029 1.01e-152 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00503 K06627 - gmx:547780 706.442