Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00502 ATGGCTCTGCTGAGAATGTCTCAGCCTCACCATAACAACATCAACAATGAACACAACAACAACAGCAACAATTTGGTCAAACCGGTTCTCCATGATTTTCTGGGCATGAAACCCACTGATTCCCCCACCGATGTGAGGTTATCGGAGCCGTCGGCATCGGTGTCTTCCGTCGGTGCACGTGGCCCCTTCTCCTCCACTTCTGATACTCTTTCTGAAAAACAGGTTGGAAATCATCTTGAGGGAGTTCCATTCTATGGCCCAAGAAGTGATTTTTCTGGCACTGAGATAAGTAACAGACTAGTGGGAAACAAGAGAAGTAATTCTGATTCCACTTTTATGGGTTCCTCTAGAGATGCCTTCCAATTGGTTCCTGACTCCTTTCAAAACTCACATTTGATGAAGGTTCTCAGGAATGCAGCTGGTGCAGAGAGGTCTAGAAGGCCCAATGATGATGAAGTGTTACTTGGTGGTATGCAGTCACTGAAGCCATCTTCTGCTTCTCAGATATTTCAGCCTCCAACCAGCAGTAAGATTGATGCCAATAAATGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGCATCCACCGCGTGGAGGGCAATTGGCACCTTTTGTACACCAAATGTCTTCAAACAAGATTAGGGATACCAATGCTGGTCCATCATATATCTCTCAGTCAGCTGCTGATGAAGGATCAAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAACACAACTGCTATTGCCACTGATAAAACTTCATCTGCAGTACTTCTTGGTGGAAGCAGGCCAAAGCCTATAACTAATATAGTAGAATCATCCACACCTCCAAGCAGTCAACATGGGCTAACATCCACCAGCCGCCAGATGACTATTTTTTACGGAGGTCAAGCTCATGTTTTTGATGATGTCCACCCTCATAAGGCAGATGTTATAATGGCTTTGGCTGGGTCAAATGGTGGATCTTGGTCCACAGCATTCTCACCAAAATCTACTGTAAAGCTGGTTAATGATAGTAACTTGCACAGTGGAGAAAATGAAACAGGTGTAGTGAGTAATATGGCATTCCCACAGGAGCTTCATGGGAAATTGTCTATTACTGGCAGTTCTAGCCACGCCATTGGGCCTGGTGATCAAGTATCTACTCCAGCAGGGGTACACCAAGGAAGCATTTTTGCTAAAGACACAAGAAATGCAGTTCAAGTAGCAGATCCCAGTTCTGAAGACAAAAGAGCACAGTGA 1257 0.4479 MALLRMSQPHHNNINNEHNNNSNNLVKPVLHDFLGMKPTDSPTDVRLSEPSASVSSVGARGPFSSTSDTLSEKQVGNHLEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSTFMGSSRDAFQLVPDSFQNSHLMKVLRNAAGAERSRRPNDDEVLLGGMQSLKPSSASQIFQPPTSSKIDANKWERSILMNVGPSMQHPPRGGQLAPFVHQMSSNKIRDTNAGPSYISQSAADEGSRTGIKGPGILSSINTTAIATDKTSSAVLLGGSRPKPITNIVESSTPPSSQHGLTSTSRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSTVKLVNDSNLHSGENETGVVSNMAFPQELHGKLSITGSSSHAIGPGDQVSTPAGVHQGSIFAKDTRNAVQVADPSSEDKRAQ. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00502 418 MobiDBLite consensus disorder prediction 36 75 - -
Seca3g00502 418 ProSiteProfiles Tify domain profile. 288 323 IPR010399 -
Seca3g00502 418 MobiDBLite consensus disorder prediction 377 418 - -
Seca3g00502 418 Pfam tify domain 290 322 IPR010399 -
Seca3g00502 418 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 91 351 IPR040390 -
Seca3g00502 418 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g00502 418 MobiDBLite consensus disorder prediction 44 74 - -
Seca3g00502 418 SMART tify_2 288 323 IPR010399 -
Seca3g00502 418 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00502 Seca-Chr3 8113253 8119333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00502 27 321 Tify Gene Family AT4G32570 39.683 1.03e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca3g00502 tify 4.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00502 - - gmx:100819293 666.766