Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00493 ATGGGTAGTGAAAGTGGAATGATGGTCCCATGTCTAAATTTTCTCAGCATTGTAATGGAATTAGAAGAAGGGAGTGGGAAATGGAAAGCCACGAGCAAGAAAGTGAAAGAAGCATGTGAGAATCATGGTTGCTTCCTCTTGTTGTGTGATGAGATCTCAAAGGGTGAACTTGAAGAATTGTCCACGGACTTGAAAGCATTGTTTGATCTTCTGGAAGAAACCAACTTTGGGATTGATGATGCTCCTCTGCCAGCTATGGCTCAGGCCTTCACTCACATTATGTGGCCTCAAGGAAACCCAGCTTTCTGTGAGACATTGAAGTCCATGAGCTCAAAGATGTTAAAATTGTGTTTCCTCATCATGAAAATGATTACAAAAGGTTATGTCCTTCCACAACATTACATTTCGAATGTTGAAAACATCAAGAGCAGTAGCAATTCAAGGTTGATGAAGTACAAAGTTTCTGAAAAAAAAACAGTAACTATGCCTCTGAGGAGAAATATGGAAGACAATGAATGTCAACCACTTGAAATTGATAAGCCCAAGGATATTTTTCTTGGACAAGTTGTTTATAGTATGGACGAAGCCTATAACTTATACCAAGAACATGCTTTCAAAATGGTCTCTAGTGTAAGAAAATGGAGGCAACTGTATTACGATAATGAGAAGAAGATCACATGCTTGAAAGAATTTTATTGCTTCAAGGAAGGGTTTAAGAATAATGAAGCTGAAGGTGAAGTGGCTTATGAAAGAGCAGATTCAAGGACAAATTGCAAAGCCATGGTGAGATTTAATGTGAGCAAGGATGGAGTGTGGAAAATTACAAAATTAGAAATGAATCACAACCACAACTTTGTGCCACCTGAGCAAAGCCATGATCACTCGTGA 888 0.3863 MGSESGMMVPCLNFLSIVMELEEGSGKWKATSKKVKEACENHGCFLLLCDEISKGELEELSTDLKALFDLLEETNFGIDDAPLPAMAQAFTHIMWPQGNPAFCETLKSMSSKMLKLCFLIMKMITKGYVLPQHYISNVENIKSSSNSRLMKYKVSEKKTVTMPLRRNMEDNECQPLEIDKPKDIFLGQVVYSMDEAYNLYQEHAFKMVSSVRKWRQLYYDNEKKITCLKEFYCFKEGFKNNEAEGEVAYERADSRTNCKAMVRFNVSKDGVWKITKLEMNHNHNFVPPEQSHDHS. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00493 295 Gene3D - 9 169 IPR027443 -
Seca3g00493 295 Pfam FAR1 DNA-binding domain 199 286 IPR004330 -
Seca3g00493 295 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 164 292 - -
Seca3g00493 295 SUPERFAMILY Clavaminate synthase-like 21 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00493 Seca-Chr3 8012219 8017536 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g00493 FAR1 1.5e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00493 - - tpra:123905334 202.601