Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00491 ATGTTGGATGTTTACATCCATGATTACCTAGTAAAGAGGGACTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCAGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATATTCATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATTAAGGCAAGGGAGCAACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCCTCAACCCCAGCAGTCACAGCATCAACAACAGCAGCAGCAACAAATGCAGATGCAACAGCTCCTGTTGCAGAGGCATGCACAGCAGCAGCAGCAGCAGCAACAACAACAGCAACAGCAGCAGCAGCAGCAACAACAACAACAACAGCAACAGCCACAACCGCAGCAACAGCAGCCACAGCCTCAACAACAACAAAATAGGGATAGGGCTCATCTTTTAAATGGTAGCGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAATGCCCTAGCCACAAAGATGTATGAGGAGAGGTTAAAACTTCCCCTTCAGAGGGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTTTTGGACCCTAATCATGCCTCAATATTGAAGTCAGCTGCAGCTACCGGCCAGCCATCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCTCGCACTCAGCAAATTCCAGGGTCTACAATGGATATAAAGAGTGAGATAAATCCCGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGTTAGCAATTCCTGGATCAAATCAAGGTAGCAACAATTTGACCCTGAAAGGGTGGCCGCTCACAGGTTTGGAGCAACTACGCTCTGGTCTACTCCAGCAGCAAAAACCTTTCATACAGGCTCCTCAGCCTTTTCAACAACTTCAAATGTTGACACCGCAGCATCAACAACAGCTTATGCTTGCACAACAAAATTTGGCATCACCATCTGCTAGTGAAGAAAGTCGAAGACTAAGAATGCTTTTGAATAATAGGAGTTTGGGCCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCGAATGTTGGATCACCTCTTCAAGGAGGTGGCCCTCCTTTTCCTCGTGGAGATACTGATATGCTGATGAAGGCTCAGTTACAGCAGCAGCAACATCAACAACAGCCAAGCACCAATGCACAGCTGCAGCAACTTCAACAGCATACTCTTTCAAATCAACAATCTCAGACTTCAAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGCGTCAACATGGATGGTAGTATGTCAAACTCTTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAGCAACCTGTATCTTCTTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACGACAGGCCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACTCATACGCCTGGAGACGTGATATCAATGCCTGCCTTGCCTCATAGTGGTACTTCTTCAAAGCCTCTAATGATGTTCGGCTCTGACGGCACCGGAACTCTTACGTCATCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGGCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAACTCTGTACGGGCAAGCACAAGCAAAATTGCCTGTTGCCATTTCTCCTCTGATGGAAAATTACTTGCTAGTGGTGGCCATGACAAAAAGGTTGTTCTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATCACTGATGTCCGTTTCAGTCCAAGCATGCCACGTCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGGTATTCACTTCGGACCTTTACGGGACATTCTACATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGACCTTATCTGCTCTTGCGACGGTGATGGCGAGATACGGTGTTGGGGCATAAACAATGGCAGCTGTACTAGAGTCTCCAAGGGTGGCACTACCCAGATGAGATTTCAGCCTCGTCTAGGGAGATATCTTGCTGCAGCTGCAGAGAACATTGTGTCTATACTTGATGTGGAGACGCAGGCATGCCGGTATTCATTAAAGGGGCACACAAAGACAATAGATTCTGTATGCTGGGATCCATCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGAATCTTGGAACAGGGAATGAAGGAGAATGTATTCATGAGCTTAGCTGTAATGGCAGTAAGTTTCACTCGTGTGTTTTCCACCCAACATACCCTTCATTGTTGGTCATTGGCTGCTACCAGTCAATGGAGCTCTGGAACATGGCCGAGAACAAGACAATGACACTGTCTGCTCATGAAGGTCTAATTACTGCATTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCAAGTCATGACAAGTTTATCAAGCTCTGGAAGTGA 2706 0.4586 MLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQQQQQQPQPQQSQHQQQQQQQMQMQQLLLQRHAQQQQQQQQQQQQQQQQQQQQQQQQPQPQQQQPQPQQQQNRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDEAAMKQRFGENMGQLLDPNHASILKSAAATGQPSGQVLHGAAGGMSPQVQARTQQIPGSTMDIKSEINPVLNPRAAGPEGSLLAIPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFIQAPQPFQQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRSLGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKAQLQQQQHQQQPSTNAQLQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGSVNMDGSMSNSFRGNDQVSKNQIGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGTSSKPLMMFGSDGTGTLTSSSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKIACCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRCWGINNGSCTRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRVWNLGTGNEGECIHELSCNGSKFHSCVFHPTYPSLLVIGCYQSMELWNMAENKTMTLSAHEGLITALAVSTVNGLVASASHDKFIKLWK. 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00491 901 ProSitePatterns Trp-Asp (WD) repeats signature. 678 692 IPR019775 -
Seca3g00491 901 SMART WD40_4 862 901 IPR001680 GO:0005515
Seca3g00491 901 SMART WD40_4 610 649 IPR001680 GO:0005515
Seca3g00491 901 SMART WD40_4 777 815 IPR001680 GO:0005515
Seca3g00491 901 SMART WD40_4 695 735 IPR001680 GO:0005515
Seca3g00491 901 SMART WD40_4 821 860 IPR001680 GO:0005515
Seca3g00491 901 SMART WD40_4 652 691 IPR001680 GO:0005515
Seca3g00491 901 CDD WD40 617 901 - -
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 869 901 IPR001680 GO:0005515
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 784 816 - -
Seca3g00491 901 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 901 - -
Seca3g00491 901 MobiDBLite consensus disorder prediction 463 523 - -
Seca3g00491 901 Coils Coil 113 146 - -
Seca3g00491 901 MobiDBLite consensus disorder prediction 140 163 - -
Seca3g00491 901 PRINTS G protein beta WD-40 repeat signature 888 901 IPR020472 -
Seca3g00491 901 PRINTS G protein beta WD-40 repeat signature 678 692 IPR020472 -
Seca3g00491 901 PRINTS G protein beta WD-40 repeat signature 636 650 IPR020472 -
Seca3g00491 901 Gene3D - 743 901 IPR015943 GO:0005515
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 617 648 - -
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 702 740 - -
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 617 658 IPR001680 GO:0005515
Seca3g00491 901 Gene3D - 411 742 IPR015943 GO:0005515
Seca3g00491 901 Coils Coil 73 95 - -
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 659 694 - -
Seca3g00491 901 Pfam WD domain, G-beta repeat 656 691 IPR001680 GO:0005515
Seca3g00491 901 Pfam WD domain, G-beta repeat 698 734 IPR001680 GO:0005515
Seca3g00491 901 Pfam WD domain, G-beta repeat 780 815 IPR001680 GO:0005515
Seca3g00491 901 Pfam WD domain, G-beta repeat 619 648 IPR001680 GO:0005515
Seca3g00491 901 Pfam WD domain, G-beta repeat 864 901 IPR001680 GO:0005515
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 694 IPR001680 GO:0005515
Seca3g00491 901 MobiDBLite consensus disorder prediction 373 543 - -
Seca3g00491 901 ProSiteProfiles LIS1 homology (LisH) motif profile. 1 30 IPR006594 GO:0005515
Seca3g00491 901 SUPERFAMILY WD40 repeat-like 615 901 IPR036322 GO:0005515
Seca3g00491 901 MobiDBLite consensus disorder prediction 410 452 - -
Seca3g00491 901 Pfam LisH 1 26 IPR006594 GO:0005515
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 702 744 IPR001680 GO:0005515
Seca3g00491 901 FunFam Transcriptional corepressor LEUNIG 745 901 - -
Seca3g00491 901 MobiDBLite consensus disorder prediction 87 106 - -
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 784 824 IPR001680 GO:0005515
Seca3g00491 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 869 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00491 Seca-Chr3 7994673 8004829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00491 696 900 Miscellaneous Gene Families AT5G08390 24.762 2.05e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Seca3g00491 WD40 0.0052 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00491 - - gmx:100816263 1285.78