Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00488 ATGGAAGAAATTGAAGGATTGAATTGTTGTAGTGAAAGTAGGAGCTGCAGTGAGAGTCGACCTCCCAATCCCAATCCATCTGCTGCTGCTGCATATCGCCAATGCCAACGCACTGACCCTATGGTGATGCCATGCAAGAAATCCCTTGTTCGCCACGCTTCTCTTCAGCCAAAAACGAAGTTGTCTGATGTATCTGCTGAGCCAGGGCATGCTACTGAAGACTGTCAATCTGATTTCCTTCCAAAGCTTCGCTCTGGAGCATGTGGTGATATTGGGTCCAGGTCATGTATGGAAGATGTATATGTTTGTGCTGACAACTTTATGCAGGATTATGGGCTCAAGAACCATATAGATGGACCCAGTGCTTTCTATGGGGTAACATTATATGGCCAATGCTTTGGTCAGGTATTTGATGGACATGGTGGAAAGCACGCTGCTGATTTTGCTTGCCATCATTTGCCGAAGTTCATTCTTGAGGATGAAGATTTCCCAGAAAATATTGAAAGGATAGTTGCTTCAGCATTTCTGCAAACAGACAAAGCCTTTGCAGAAGCTTGCTCTCTGGATGCTGCCCTTGCATCTGGCACCACTGCATTGGCTACTCTTGTTATTGGAAGGTTACTGGTGGTGGCAAATGCCGGAGATTGTCGAGCTGTACTGTGCCGTCGTGGAAAAGCAATTGAGATGTCAAGAGATCATAAACCAATTTGCAGTAAAGAGAAGAAGCGAATCGAGGCATCTGGAGGGTTTGTCTATGATGGATACCTCAACGGACAGCTTAATGTTGCTCGTGCTATAGGTGACTGGCACATGGAAGGAATGAAAGGCAAAGATGGCGGACCACTCAGTGCAGAACCTGAACTTATGACTACAAAACTCACTGCTGAGGATGAATTTCTCATCATAGGTTGTGATGGAATTTGGGATGTATTTAGGAGCCAAAATGCAGTAGATTTTGCTCGGCGCAGGCTTCAGGAGCATAACGACCCAGCCATGTGTAGTAAAGATCTGGTTGATGAGGCATTAAAGAGAAAGAGTGGAGACAATTTAGCTGCTGTTGTGGTTTGCTTCCAGCAGCAGCCACCACCTAACTTGGTGGCACCGCGCTCTAGAGTGCACAGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTCCTAGACAGCTTGGGTAATTGA 1182 0.4619 MEEIEGLNCCSESRSCSESRPPNPNPSAAAAYRQCQRTDPMVMPCKKSLVRHASLQPKTKLSDVSAEPGHATEDCQSDFLPKLRSGACGDIGSRSCMEDVYVCADNFMQDYGLKNHIDGPSAFYGVTLYGQCFGQVFDGHGGKHAADFACHHLPKFILEDEDFPENIERIVASAFLQTDKAFAEACSLDAALASGTTALATLVIGRLLVVANAGDCRAVLCRRGKAIEMSRDHKPICSKEKKRIEASGGFVYDGYLNGQLNVARAIGDWHMEGMKGKDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPAMCSKDLVDEALKRKSGDNLAAVVVCFQQQPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLGN. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00488 393 Pfam Protein phosphatase 2C 132 349 IPR001932 -
Seca3g00488 393 SMART PP2C_4 74 355 IPR001932 -
Seca3g00488 393 FunFam Probable protein phosphatase 2C 22 69 360 - -
Seca3g00488 393 PANTHER PROTEIN PHOSPHATASE 2C 67 355 IPR015655 GO:0004722|GO:0006470
Seca3g00488 393 CDD PP2Cc 84 357 IPR001932 -
Seca3g00488 393 MobiDBLite consensus disorder prediction 1 29 - -
Seca3g00488 393 ProSiteProfiles PPM-type phosphatase domain profile. 84 357 IPR001932 -
Seca3g00488 393 Gene3D - 63 361 IPR036457 -
Seca3g00488 393 MobiDBLite consensus disorder prediction 10 29 - -
Seca3g00488 393 SUPERFAMILY PP2C-like 79 359 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00488 Seca-Chr3 7944253 7947844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00488 1 393 PP2C-type Phosphatase Gene Family AT2G25620 67.246 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00488 K14803 - gmx:100815725 630.557