Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00479 ATGTTACAAGCCACAGCCGTTTACGGTTCGAACCACAAGCTTGAGTCAAATTATGCGCTTGAGTCGCACTGCCTTTCTAAATCTCGCCCATTCAAACGTTGGAGATGCGACAATAATCATGACCAAATTTCTCCAACATTTGGCAGAATTAATGACTGGAGATATTGGTGGTGTTTTGCATCAAACACAGACCACGCGCTGGCTCTGGATTTGCCCATCACCACATGTTTTGCAGTCAATGTAAATGATTATACTTTGTTAAATCGGTTGCTGAAGAAGGGATCAGATCCAAATGAAGTAGATGACCATGGAAGGACAGCACTGCATATTGCAGCTTCTAATGGCAGTGTGTGTTGTGTGTCTTTGCTTCTAGGACACGGTGCTGATCCAAATAGGACAGATCGGGAAGGAAATGTGCCACTCTGGGAAGCCAACAGGGGTGGGCATGCACCTGTAGTTGAATTTCTTGGTGCAGCTATGGATGCAGCAGGTTGCAGCCGGTCTAGCAGGGCTGATGGATCGTCTTAA 528 0.4621 MLQATAVYGSNHKLESNYALESHCLSKSRPFKRWRCDNNHDQISPTFGRINDWRYWWCFASNTDHALALDLPITTCFAVNVNDYTLLNRLLKKGSDPNEVDDHGRTALHIAASNGSVCCVSLLLGHGADPNRTDREGNVPLWEANRGGHAPVVEFLGAAMDAAGCSRSSRADGSS. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00479 175 Pfam Ankyrin repeats (3 copies) 77 156 IPR002110 GO:0005515
Seca3g00479 175 Gene3D - 61 168 IPR036770 -
Seca3g00479 175 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN 78 156 - -
Seca3g00479 175 SMART ANK_2a 136 165 IPR002110 GO:0005515
Seca3g00479 175 SMART ANK_2a 68 99 IPR002110 GO:0005515
Seca3g00479 175 SMART ANK_2a 103 132 IPR002110 GO:0005515
Seca3g00479 175 ProSiteProfiles Ankyrin repeat region circular profile. 103 135 - -
Seca3g00479 175 SUPERFAMILY Ankyrin repeat 76 156 IPR036770 -
Seca3g00479 175 ProSiteProfiles Ankyrin repeat profile. 103 135 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00479 Seca-Chr3 7787599 7792151 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00479 61 157 Ion Channels AT2G25600 57.000 4.28e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00479 K21867 - qsu:111988309 124.02