LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g00477	ATGAAACCTGATAGGAAAAGAGATCACAAACCTCTCACTCGTACAAAATGCAATGCTAGGTTGCGGGTTCGCCTTGATTATAGTACATCAAAATGGAAAGTGGTGGCATTTGATCCGGCTCATAACCATGCTTTAGCCCCTCCGAAATTGGTGCCATGTATTTCTACCTATCGCGGCTTAAATGATGCAGACAAAGCTCAGGTGGAAGCCTTGCATTCACATGGTGTTAGACCGTGTCAAATTTTGGGGTACATGTTAAAAGGAGGATATGGTAATTTAGGTTTTTCCAAGACAGACTTATATAACTGTATTCGTGAGTTAAAGGCTTCCAAGATCAAAGATGGGGATGCAGTGGCTGCCTTAAGTTATCTAGGCGGGAAGGCAGACAATGATCCGATGTTTTTCTCAAGATTCTTACTTACAAAGGATGGCAATCTAAAGCATCTGTTTTGGGCTGATGGAACTAGTAGAATTGTTTATCAGTGTTTTGGAGATGTGATTGCATTTGACTCCACATACAAGAAAAATAAGTATAATCATCACCCTCTTGTCATCTTCTCTGGTAAAAATCAGTTGTATTTGCATGTATCTATCTAA	597	0.3987	MKPDRKRDHKPLTRTKCNARLRVRLDYSTSKWKVVAFDPAHNHALAPPKLVPCISTYRGLNDADKAQVEALHSHGVRPCQILGYMLKGGYGNLGFSKTDLYNCIRELKASKIKDGDAVAALSYLGGKADNDPMFFSRFLLTKDGNLKHLFWADGTSRIVYQCFGDVIAFDSTYKKNKYNHHPLVIFSGKNQLYLHVSI.	199

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g00477	198	PANTHER	OS01G0519700 PROTEIN	4	186	-	-
	Seca3g00477	198	Pfam	FAR1 DNA-binding domain	5	46	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g00477	Seca-Chr3	7771941	7772742	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca3g00477		FAR1	7.5e-08	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g00477	-		-	ccaj:109811679	259.61