Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g00475 | ATGAAGGCTGAGTATTTTCCCCCAAAGGAAGATGTGATTTTGGAGAATGAAGCGCCAACAGACTTTTATATCTTTGTCACTGGTTCCGCAGAACTTATTATACGAAAGAATGGAATAGAACATGTAGTTGGTGAGGCAAAGGCAGGAGATGTTGTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAGCTGTTTACAGTTCGAACCAAACGATTGAGCCAACTTCTGCGCTTGAATCGTACTACATTTCTAAATCTTGTTCATTCAAATGTTGGAGATGGGACAATAATCATGAACAATTTTCTCCACCATTTGCAAGAATCAAGGCATCCAGGGATGGATGTTATTTTGGCAGAAACAGAGACCATGCTGGCTAGGGGTAGAATGGATTTGCCCATTAGCACATGCTTTGCAGCAAACAGAAATGATGACCTATTGTTACATCGGTTGCTTAAGAAGGGTTCAGATCCAAATGAAGTAGATAAGAATGGAAGGACAGCATTGCATATTGCAGCTTCTAATGGCAATGAGCATTGTGTAACTTTGCTTCTAGAATACGGTGCTGATCCAAATAGCAAAGATTCGGATGGAAATTTCCCACTATGGGAAGCAATGATGGGTAGGCATAAATCTATCATGAAACTTCTTGTAGACAATAGTGCAGACATATCCTCTTTCAATGCAGGCCATCTAGCATGCACTGCTGTTGAGCAAAATGACTTAGAATTGCTCAAGGAAATTGTTCAACTTGGTGTGGATGTGACACAACCCAAAATGAATGAAACCACTGCCCTCCATGCTGCAGTATGTGAAGGAAATGGAGAGCTGGTAAAGTTCCTTCTAGACCAAGGAGCAGACATTGATAGGCCAGATGTTAATGGCTGGACTCCAAGGGCTTTGGCAGAACATCAAGGCCATGAAGAAATTAAAGATATATTCCAGAAAAGTGGAGACTGCAGAAAAGCACCAGTTATTATTCCAATACCAACATCAAAGGATGCTAAGGTGTCAAAGTTCCAAAGTGAACCCACTATGCCTGCTACTGCTAGTCTTTCCCAAGAAAGCATTCCAGAGCCACCTAATCAAGAGTTAACTTGGCTAGATAATCATAGAAGAAGAAGGGCCAGCAATTTTCATAATTCCATTTTTGGAATGATCTCAGCTGCCAATCGTGATAATAAAGTTCGCAAGGAAGCTGAAAGCAGTAACACTAATAGGAGGAACGTGAATGGATTAGTAGGCAGAGTGACACTGAGTTGTCCTGAAAGAGATGCACATGCTGGAAAGCTTGTTTTGCTGCCCAATTCTCTTCAAGAACTGTTAGATATTGGTGCCAAAAAGTTTGATTTCTCTCCCACCAAAATTTTGACTAGTGAAGGAGCTGAAGTTGACGATATAAATCTTATAAGAGATGGTGATCATCTTATTATTGCAAGTGACTGA | 1443 | 0.4082 | MKAEYFPPKEDVILENEAPTDFYIFVTGSAELIIRKNGIEHVVGEAKAGDVVGEIGVLCYRPQLFTVRTKRLSQLLRLNRTTFLNLVHSNVGDGTIIMNNFLHHLQESRHPGMDVILAETETMLARGRMDLPISTCFAANRNDDLLLHRLLKKGSDPNEVDKNGRTALHIAASNGNEHCVTLLLEYGADPNSKDSDGNFPLWEAMMGRHKSIMKLLVDNSADISSFNAGHLACTAVEQNDLELLKEIVQLGVDVTQPKMNETTALHAAVCEGNGELVKFLLDQGADIDRPDVNGWTPRALAEHQGHEEIKDIFQKSGDCRKAPVIIPIPTSKDAKVSKFQSEPTMPATASLSQESIPEPPNQELTWLDNHRRRRASNFHNSIFGMISAANRDNKVRKEAESSNTNRRNVNGLVGRVTLSCPERDAHAGKLVLLPNSLQELLDIGAKKFDFSPTKILTSEGAEVDDINLIRDGDHLIIASD. | 481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g00475 | 480 | Gene3D | Jelly Rolls | 1 | 115 | IPR014710 | - | |
| Seca3g00475 | 480 | ProSiteProfiles | Ankyrin repeat profile. | 163 | 195 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | FunFam | Potassium channel KAT2 | 1 | 109 | - | - | |
| Seca3g00475 | 480 | Pfam | Cyclic nucleotide-binding domain | 5 | 90 | IPR000595 | - | |
| Seca3g00475 | 480 | SUPERFAMILY | Ankyrin repeat | 136 | 315 | IPR036770 | - | |
| Seca3g00475 | 480 | Pfam | Ankyrin repeats (3 copies) | 235 | 312 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | Pfam | Ankyrin repeats (3 copies) | 137 | 225 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | PANTHER | POTASSIUM CHANNEL AKT1 | 1 | 478 | IPR045319 | GO:0005249|GO:0006813 | |
| Seca3g00475 | 480 | CDD | CAP_ED | 1 | 90 | IPR000595 | - | |
| Seca3g00475 | 480 | ProSiteProfiles | Ankyrin repeat profile. | 260 | 292 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | MobiDBLite | consensus disorder prediction | 334 | 361 | - | - | |
| Seca3g00475 | 480 | ProSiteProfiles | Ankyrin repeat region circular profile. | 163 | 194 | - | - | |
| Seca3g00475 | 480 | Gene3D | - | 132 | 315 | IPR036770 | - | |
| Seca3g00475 | 480 | ProSiteProfiles | Ankyrin repeat region circular profile. | 260 | 291 | - | - | |
| Seca3g00475 | 480 | Pfam | KHA, dimerisation domain of potassium ion channel | 415 | 477 | IPR021789 | - | |
| Seca3g00475 | 480 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 1 | 104 | IPR000595 | - | |
| Seca3g00475 | 480 | SMART | ANK_2a | 130 | 159 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | SMART | ANK_2a | 260 | 289 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | SMART | ANK_2a | 227 | 256 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | SMART | ANK_2a | 196 | 225 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | SMART | ANK_2a | 163 | 192 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | SMART | cnmp_10 | 1 | 102 | IPR000595 | - | |
| Seca3g00475 | 480 | ProSiteProfiles | KHA domain profile. | 415 | 480 | IPR021789 | - | |
| Seca3g00475 | 480 | MobiDBLite | consensus disorder prediction | 333 | 361 | - | - | |
| Seca3g00475 | 480 | SUPERFAMILY | cAMP-binding domain-like | 1 | 105 | IPR018490 | - | |
| Seca3g00475 | 480 | ProSiteProfiles | Ankyrin repeat profile. | 196 | 228 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | PRINTS | Ankyrin repeat signature | 164 | 179 | IPR002110 | GO:0005515 | |
| Seca3g00475 | 480 | PRINTS | Ankyrin repeat signature | 276 | 290 | IPR002110 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g00475 | Seca-Chr3 | 7758127 | 7761274 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g00475 | 1 | 480 | Ion Channels | AT2G25600 | 57.851 | 0.0 | 541 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g00475 | K21867 | - | gmx:100786870 | 667.151 |