Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00468 ATGGTGTTATTTACAATAAGGCAACCTGTCAACACACATCAAAACCTTATTTCTTCATACTCTTTACTTGATTCTGCAACTCTTATTTACCCAGCACCACCTATTTGTTCTCCCAGTGAAAGGTTTGGAAGGTTTCCTGATTTTATAGGAGGTGTCAACCTTAATTCCCACAGAGTGAGTGTAGAACCTTTTCTTTTGTCTGAGGATCCCAACATGGTTCATCAAGAAAACGCAGAACATGTTGAAGGGCCTTTTCAAGAATGCAGAGAGGTTGAATCCAATTTGTTTGCTGATGCTTTTTCCAAGGAACTTCAGAGCTTTGAATTTGAGGAATCTGTTGCATCAAATTCTATTGGAAATGAAGAAGAAAGCCCTCTTATTGATAATCCTTATGGTTTCCTGAGACTGTGTGAAGAACATTTGCTTTTGCCTAAGGAATCTAAGATGGTTGATCAAGACTTCAGAGGGGCACAACCCAATTACTTTGCAGATCTTGTTTTAGAGAAACAACATTGTCTTAATTTAATTGGCCAGCTTGCAAAAAACAAGGGGAAGGGTGTTCAAGTGATGGAACATGATTCAACTTCAAGTACATCACAAAATTCTAAAATATTTCGGAAAAGAACACTACCCACCACATATAGAAGATGCTATTGTAGGAAGAGTTGTCGCGTCAAAAATTGTGGTTGTTTTAGAACTGGATTCTATTGTACCCAGAATTGTCCTTGCAGAGGAGGCTGCTTTAATGAACCAGATCAAAATGTAGACGGTTTAACACAGGAGAATGTCATTCTGAAGAAACCACTCAAACCCAAACCACCACGTTGCGCTTGCCAGGTGTCAAAGTGTCAGAAATTACCTTGTTCTTGCTATGTGGCTAAAGTTGGATGCACCCTAAGATGTCAATGCAAGGGACGTGAGAATTGCTATGATTATCCAAGAAGCACCAGGCATTGA 957 0.3939 MVLFTIRQPVNTHQNLISSYSLLDSATLIYPAPPICSPSERFGRFPDFIGGVNLNSHRVSVEPFLLSEDPNMVHQENAEHVEGPFQECREVESNLFADAFSKELQSFEFEESVASNSIGNEEESPLIDNPYGFLRLCEEHLLLPKESKMVDQDFRGAQPNYFADLVLEKQHCLNLIGQLAKNKGKGVQVMEHDSTSSTSQNSKIFRKRTLPTTYRRCYCRKSCRVKNCGCFRTGFYCTQNCPCRGGCFNEPDQNVDGLTQENVILKKPLKPKPPRCACQVSKCQKLPCSCYVAKVGCTLRCQCKGRENCYDYPRSTRH. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00468 318 SMART CXC_2 212 253 IPR033467 -
Seca3g00468 318 SMART CXC_2 271 312 IPR033467 -
Seca3g00468 318 ProSiteProfiles CRC domain profile. 213 314 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00468 Seca-Chr3 7678319 7681287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00468 166 310 CPP Transcription Factor Family AT3G22760 28.889 3.91e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca3g00468 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00468 - K24333 tpra:123912781 64.6994