Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00464 ATGGCGATTCAGTGTTCTTCATGTGCTCGCTTCCTGGCAGGAGGGCCTTTGCAACGCAAACCTCTTCTCTGCTCCGTCGTCCTTTCTACTCGTCCTCGGAATCGGAACGTCAACCTAATTGTCGCCGCCTCTTCCAAAAAGAAAAACAAGAAAAAATTGTCGCAGAGTCATGTTACCGAAGGGGATGAGGAGGAGGACGCATTTGAGTTGCTCTTCAAGCAACTTGAAGAAGATCTAAAAAACGATGATTTGTCAAAAGATGATACCAGTGATGAGATAACTGAAGAAGAAATTGCCCTATTAGAGCGCGAGTTAGCAGATGCATTGGGGGACTATGATACTGAATTGTTAAATTTAGAAGCGAGTGACACAGAAGCCGGTGAAGATTCAGAAAATGGCAATGATGATGATGATGATGATGATGATGATGATGATGATGGAGATGAACGCTCACTGAAGCTTAGAAATTGGCAAATGAAGAAATTGGCTAGAGCTTTAAAAGTTGGCCGCCGCAAAACAAATGTAAGTGTCTTGCTCCTGTCTTATATGGATTTTCAACGGAACTTGCTTGTTCACTTGTTGGCTATTGTACTTGAATTGCTTCGCAACCCCCCTCCAAATCTTCTCATGATGAGTCTATCACTACCTGATGAACCCACAACAACTGTAACATCGCTTGAAACTAAACCCAAAGAGATAGTCGTTCATAAAGAAACAAATACGGACCGAGCAGAATCTGGACCCAAGGTTCAAGTACCTATTCATGCCATGCAACGCAGTTGGTCTGCTCAAAAGAGATTAAAAAAGGCCCATGTTGACACTTTGGAGAGAGTTTATAGGAGATCGAAACGGCCCACTAATGCAATGATCAGTAGTATCGTGCATGTAACTAACATTCCTCGGAAAAGAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAGGAGGGAGTTCCAGATCGCCGTGATCCTTACCAGCGCTCTGTTCCTGAATCTGCTCGAAGATTTTAG 1008 0.4335 MAIQCSSCARFLAGGPLQRKPLLCSVVLSTRPRNRNVNLIVAASSKKKNKKKLSQSHVTEGDEEEDAFELLFKQLEEDLKNDDLSKDDTSDEITEEEIALLERELADALGDYDTELLNLEASDTEAGEDSENGNDDDDDDDDDDDDGDERSLKLRNWQMKKLARALKVGRRKTNVSVLLLSYMDFQRNLLVHLLAIVLELLRNPPPNLLMMSLSLPDEPTTTVTSLETKPKEIVVHKETNTDRAESGPKVQVPIHAMQRSWSAQKRLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKRVVKWFEDKRAEEGVPDRRDPYQRSVPESARRF. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00464 335 MobiDBLite consensus disorder prediction 122 147 - -
Seca3g00464 335 SMART HOX_1 257 322 IPR001356 GO:0003677
Seca3g00464 335 MobiDBLite consensus disorder prediction 312 335 - -
Seca3g00464 335 Gene3D - 260 321 - -
Seca3g00464 335 Pfam Homeodomain 266 314 IPR001356 GO:0003677
Seca3g00464 335 CDD homeodomain 261 313 IPR001356 GO:0003677
Seca3g00464 335 ProSiteProfiles 'Homeobox' domain profile. 258 318 IPR001356 GO:0003677
Seca3g00464 335 SUPERFAMILY Homeodomain-like 260 318 IPR009057 -
Seca3g00464 335 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 43 325 - -
Seca3g00464 335 MobiDBLite consensus disorder prediction 121 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00464 Seca-Chr3 7582021 7585757 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca3g00464 Homeodomain 5.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00464 - - ccaj:109796293 379.793