Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00458 ATGGGAGAAACAAAGGACGAAGCATACGAGGAAGAGCTTCTTGACTACGATGAGGAAGAAGATAAGGCCCCGGACTCCGTCGGAGCTAAAGTCAACGGTGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAACCAGAGCTTCTTCGGGCTATTGTGGACTCCGGATTTGAGCATCCTTCTGAAGAAAGGTTTATTTTACTTATCACCGGTTGCTTCGGCCCTGTTTTCTTTGCTTTATCATCAGTGCAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAGACCGCTGTCTTTGTTCTCTCATCTTTGCAGCAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTGTGTCATACAAGAGAATTAGCTTACCAGATATGCCATGAGTTTGAGAGGTTCAGCACCTACTTACCTGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTAGCATTGGCCAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGTGATAAAATGCTGGAATCGCTGGACATGCGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGACCTTCTTGATGCACTAGACTTCAACCAAATTGTTATCTTTGTTAAAAGCGTTAGTAGAGCAGCCGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAAGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATTCAAGGATTCTTGTTGCAACAGATTTGGTTGGCAGGGGTATTGATATTGAACGTGTCAATATTGTTATTAACTATGACATGCCTGATTCTGCAGACACATACTTGCATAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAGGGCCTTGCAATCACATTCGTTTCATGTTCTACTGATGTTGATGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTCGATATAAAGCAGCTTCCAGAGCAGATTGATACCTCTACCTACATGCCATCGTAG 1344 0.4293 MGETKDEAYEEELLDYDEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEERFILLITGCFGPVFFALSSVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHSRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00458 447 Pfam DEAD/DEAH box helicase 91 256 IPR011545 GO:0003676|GO:0005524
Seca3g00458 447 CDD DEADc_DDX39 45 272 - -
Seca3g00458 447 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g00458 447 SMART ultradead3 85 286 IPR014001 -
Seca3g00458 447 SMART helicmild6 322 403 IPR001650 -
Seca3g00458 447 MobiDBLite consensus disorder prediction 1 29 - -
Seca3g00458 447 FunFam DEAD-box ATP-dependent RNA helicase 279 447 - -
Seca3g00458 447 Gene3D - 279 446 IPR027417 -
Seca3g00458 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 417 IPR027417 -
Seca3g00458 447 CDD SF2_C_DEAD 283 412 - -
Seca3g00458 447 Gene3D - 42 278 IPR027417 -
Seca3g00458 447 Pfam Helicase conserved C-terminal domain 296 403 IPR001650 -
Seca3g00458 447 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 272 - -
Seca3g00458 447 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 270 IPR014001 -
Seca3g00458 447 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 421 - -
Seca3g00458 447 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 443 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00458 Seca-Chr3 7482164 7490919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00458 1 447 Eukaryotic Initiation Factors Gene Family AT5G11200 79.346 0.0 745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00458 K12812 - gmx:100808957 813.527