Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00453 ATGGTACAAGCAAGGAAGTTCAGAGGAGTGAGGCAGAGACAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCATTGCTGAAGAGAAGGGTGTGGCTAGGTACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGATCAAGCAGCTATTTTGATGAATGGACAGAATGCAAAGACCAATTTCCCAAATTCAAAGAATCAAGCTGAAGATGCTACACCTAATAATTGTGGTGGTGATGATACTTTCTTATCTCCCAAGGCTCTTTCAGAGCTACTTAGCACAAAGCTTAGAAAGTATTGCAAAGACCCTTCTCCATCCCTTACTTGTCTGAGGCTAGATGCTGACAATTCTCACATTGGGGTGTGGCAAAAAGGTGCAGGACCTCATTCTAACTCTAATTGGGTCATGAGGGTAGAGCTTGGGAAGAAACAAACAGAGGGTAAGCCAACAACAGGGTCACCACATAGTACTAGTGATGCTGGAAGTAATATTGGGGTAGGAGAAGAAGAGGATAGAGTTGCTATGCAGATGATTGAAGAGCTACTTAATTGGAACTATCCCTGTGATTCAACTTCAAGTAACTCCCAGCAAGAAGAAAAAAGGAACCTTCCATGTCATATATAA 627 0.4386 MVQARKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPNSKNQAEDATPNNCGGDDTFLSPKALSELLSTKLRKYCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSNSNWVMRVELGKKQTEGKPTTGSPHSTSDAGSNIGVGEEEDRVAMQMIEELLNWNYPCDSTSSNSQQEEKRNLPCHI. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00453 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 157 - -
Seca3g00453 208 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Seca3g00453 208 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Seca3g00453 208 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Seca3g00453 208 MobiDBLite consensus disorder prediction 147 164 - -
Seca3g00453 208 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Seca3g00453 208 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Seca3g00453 208 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Seca3g00453 208 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Seca3g00453 208 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Seca3g00453 208 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Seca3g00453 208 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00453 Seca-Chr3 7447622 7449076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00453 1 188 AP2-EREBP Transcription Factor Family AT5G25390 62.234 4.61e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g00453 AP2 2.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00453 - - lang:109326202 303.908