Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00452 ATGATAGGAAATCAACCCTCCAACCCCAAATGGAAGGAGACCTTTGAAATTTATTGTGCTCATAATGTCTCAAACATTATATTCACTGTCAAAGATGGTAATCCAATTGGTGCAACTCTAATTGGAAGAGCTTATGTCCCTGCTAACCATGTCATCAAGGGTCCTATAATTAACAGATGGGTTGAGATAATAGATGATGAAGATCATCGTCCTGTTAGGGGTCACTCTAAAATTTGTGTCAGTGTGCAATTCACAAGTGTTACTGAGGATAAAAAATGCCAATGGTCTCAAGGAATACACATGCCATTTATGGGAGTTCCTCGTACATTTTTCAACCAAAGAGAAGGTTGTAATGTCACTTTATACCAAGATGCACATGTTCCTGATAATGCACTCCCTTGGATTCCAATTTCAGGTACAAAATATTATGTGCCTGGGAGATGTTGGGAGGACATTTACAATGCCATTGTGGAAGCTAAGTACTTTATTTACATAACTGGTTGGTCTGTGTATACTGAAATAACTTTGATTAGGGATGCAAAGAATTTAAAAACAAGTGTCAAACTTGGGGAGTTGCTTAAGATGAAAGCTGATGAAGGGGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACCTCTGTTCCAGACCTGAAAAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCTGATTATTTTAGAAACACAAAGGTGCATTGTGTTTTGTGTCCACGTGACCCTGGTGGTGGAAGAAGCATGGTTCAAGGTTTTCAAATCTCAACCATGTTTACTCACCACCAAAAGACTATAATACTTGATAGCAAAATTGAAGGATTGAAAAAGAGAAAGGTTATAAGTTTCATAGGTGGTCTTGATCTTTGTGATGGGAGATATGATACTAGGGAACATCCACTATTTTCAACTCTTAATACAGTCCATCATGATGATTTCCATCAACCGAATTTCCCAGGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCATTGCAAGCTAGAAGGACCTATTGCATGGGATGTCTTGTATAATTTTGAGCAAAGGTGGGAGAAGCAAGCTGGGAAGGAATTCCAACAATTCCTATTCCCACTTGATGTGCTTGATAGATTTCTAGTCCATCCATCTGAAGCAGTGCCATCAGAAGATGGGGACATGTGGAATGTTCAGTTGTTCAGGTCTATTGATGGTGGTGCTGTCTCTAACTTCCCTCAAGCCCCAGATGAAGTTGCTGAATTAGGCCTTGTTAGTGGGAAAAATAACATCATTGATAGAAGTATTCAGGATGCTTATATAAATGCTATTAGGAGAGCAAAGAATTTCATCTACATTGAAAATCAGTATTTCCTAGGGAGTTCATATGGTTGGAAACCATCTGAGTCTGTGTCTGACATAAAAATTGAGGATATTAATGCTTTGCATCTTATACCAAAGGAGCTTTCATTGAAGATTGTTAGCAAGATTGAAGCAGGAGAGAGGTTTGTTGTGTATGTGGTGATACCAATGTGGCCAGAAGGTGTACCTGAAAGTGCTTCTGTTCAGGCAATATTAGGTTGGCAAAGAAGGACTATGGAGATGATGTATTCTGACATTGCTGATGCCATAAAAAAGAAGAACATTGAAGCACACCCTAGGGATTATTTGACATTCTTTTGCCTTGGCAAGAGGGAGAGAAAGACAGAAGGAGAATATACTCCTCCAGAGGAACCAGAGCCTGACAGTGACTATCAAAGAGCACAAAATGCTAGGAGGTTCATGATCTATGTTCATTCCAAGATGATGATTGTGGATGATGAATACATAATCATTGGTTCTGCCAACATCAACCAGAGATCAATGGATGGTGGAAGAGACACAGAGATTGCAATGGGGGCAATCCAACCACATCATCTAACATCCCTTGGCCCAAAAAGACCACAAGGTCAGATTTATGGGTTCAGGAGAGCATTATGGTATGAGCATATTGGGGATTCTCATGAGGCTTTTGATGAGCCTGAAAGTGAGGAATGTGTGAAACTTGTGAATGGTGTTGCTGAGATGAACTGGGAGTTATACTCCAAAGACACACTTGATGAAAGTGATCAACCAGTTCACCTTTTGAGATATCCTATAGAAGTTATTGGGATGGGTCTCTATGCAACAGTTGATTTAGATAAGGCAAGGGTTGGGAGGACCAGGATGTTAGATGATCAACCCTCCAACCCCAAGTGGAATGAGACCTTTCACATATATTGTGCCCATTTAATCTCCAACATTATATTCACTGTCAAACAAAATAACCCCATTGGGGCTACTCTAATTGGAAGAGCTTATGTCCCTGTTGGCCAAGTTATTAAGGGCAATATAGTGGATACATGGGTCCAGATATTAGATGAGAACCATCATCCCATACCAAGTGGCTCTAAAATCCATGTTAGAATGCAATACTTTGATGTCAAGAATGACTCAAACTGGTCTCAAGGAATAAGGAGTCCAGGATTTCAAGGAGTTCCACACACATTCTTTAGTCAAAAAACTGGTTGCAGAGTTACTTTGTACCAAGATGCTCATGTTGCAGATGTTTTTGTGCCTAGGATCCCATTATATGGAGGAAAACCTTATGAGCCTGGGAGATGCTGGGAGGATATTTACAATGCCATTATGGATGCTAATTACTTTATTTACATAACTGGTTGGTCTGTGTATACTGAAATAACCTTGATTAGGGACACAAGGAAATCAAGTATCAAACTTGGAGATTTGCTTAAGATGAAAGCAGATGAAGGTGTTACTGTTCTTATGCTTATTTGGGATGACAGAACCTCTGTTCCAGACCTGAAGAAAGATGGCTTGATGGTAACTCATGATCAAGAAACTGCTGAATTTTTTAGAAACACAAAAGTGCATTGTGTTTTGTGTCCACGTGACCCTGGTGGTGGAAGAAGCATGGTTCAAGGTTTTGAAATCTCAACCATGTTTACTCACCACCAAAAGACTATTGTACTTGATAGCCAAGTTGTTGGAGCTGTGGGAAGATGGCAAAAGAGAACAATCTCAAGCTTCATAGGTGGTATTGATTTGTGTGATGGAAGATATGATACACAAGAACATCCTCTATTTTCAACTCTTAACACAGTCCATCATGATGATTTCCATCAACCAAATTTCCCAAGTGCTTCAATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCATTGCAAGCTAGAAGGACACATTGCTTGGGATGTATTGTGCAATTTTGAGCAAAGGTGGAGGAAGCAAGCTGGGAAGGAACTCCAACAATTCCTACTCCCTTCAAGCATGTTTGATGAATATCTTGTCCCTAAATCAAGTGTAGCAACAACAAATGAAAATGAGACATGGAATGTTCAAGTGTTCAGATCCATTGATGGTGGTGCTGCTTCTGGTTTCCCACAAGACCCTGATGAAGCTGCTGAATTAGGCCTTGTTAGTGGGAAAGATAACATCATTGATAGAAGCATTCAAGATGGTTACATAAATGCTATTAGGAGAGCAAAGAATTTCATCTACATTGAGAATCAGTATTTCCTAGGGAGTTCATATGGTTGGAAAGGATCTGATATTAAAGTTGAGGATATAAATGCTTTGCATCTTATACCAAAGGAGTTGTCATTGAAGATTGTTAGCAAGATTGAAGCAAGAGAGAGGTTTTCTGTCTACATTGTCATCCCAATGTGGCCAGAAGGTGTGCCTGAGAGTGAGTCAGTTCAAGCTATATTAGATTGGCAAAGGAGGACAATGGAGATGATGTATACTGATATTGCTGAAGCCATCCGGAGAATGAGAATTAGAGCACACCCTAGGGATTACTTGACTTTTTTCTGCCTTGGAAATCGTGAGGGTATGGAAGGTAAAGAATATATCCCTTTGGAGACACCAGAGCCTGATAGTGATTATAGTAGAGCACAAAAGTCCAGGCGATTTATGATCTATGTTCATGCAAAGATGATGATAGACTTTTGCTTAATTTCTTCAGTTGATGATGAATACATAATCATTGGTTCTGCCAACATAAACCAAAGATCAATGGATGGTGCAAGGGACAGTGAGATTGCAATGGGAGCATTCCAACCACGCCATTTAAGTGTAACATCTTCGAGAGGACAGATATATGGATTGAGACGTGCATTATGGTATGAGCACCTTGGGGATGATGGTGATACAAACATCTTTGACAATCCAGAAAGTGTGAACTGCATCAAGCTTGTGAATCGTTTAGCTGAGACCAACTGGGACATATACTCACAGGAAACATTTGATGAATACAGAGCATTTCACCACCTCATGCGTTACCCTGTACAAGTAACATATGATGGAGCCATAACAAACCTTCCAGGACTTGAATGTTTTCCTGATACCAAGGCTCGGATTCTCGGTTCCAAAGCACAGTACCTTCCTCCAATTCTCACCACCTAG 4473 0.4017 MIGNQPSNPKWKETFEIYCAHNVSNIIFTVKDGNPIGATLIGRAYVPANHVIKGPIINRWVEIIDDEDHRPVRGHSKICVSVQFTSVTEDKKCQWSQGIHMPFMGVPRTFFNQREGCNVTLYQDAHVPDNALPWIPISGTKYYVPGRCWEDIYNAIVEAKYFIYITGWSVYTEITLIRDAKNLKTSVKLGELLKMKADEGVNVLMLVWDDRTSVPDLKKDGLMATHDQETADYFRNTKVHCVLCPRDPGGGRSMVQGFQISTMFTHHQKTIILDSKIEGLKKRKVISFIGGLDLCDGRYDTREHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQAGKEFQQFLFPLDVLDRFLVHPSEAVPSEDGDMWNVQLFRSIDGGAVSNFPQAPDEVAELGLVSGKNNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKPSESVSDIKIEDINALHLIPKELSLKIVSKIEAGERFVVYVVIPMWPEGVPESASVQAILGWQRRTMEMMYSDIADAIKKKNIEAHPRDYLTFFCLGKRERKTEGEYTPPEEPEPDSDYQRAQNARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAIQPHHLTSLGPKRPQGQIYGFRRALWYEHIGDSHEAFDEPESEECVKLVNGVAEMNWELYSKDTLDESDQPVHLLRYPIEVIGMGLYATVDLDKARVGRTRMLDDQPSNPKWNETFHIYCAHLISNIIFTVKQNNPIGATLIGRAYVPVGQVIKGNIVDTWVQILDENHHPIPSGSKIHVRMQYFDVKNDSNWSQGIRSPGFQGVPHTFFSQKTGCRVTLYQDAHVADVFVPRIPLYGGKPYEPGRCWEDIYNAIMDANYFIYITGWSVYTEITLIRDTRKSSIKLGDLLKMKADEGVTVLMLIWDDRTSVPDLKKDGLMVTHDQETAEFFRNTKVHCVLCPRDPGGGRSMVQGFEISTMFTHHQKTIVLDSQVVGAVGRWQKRTISSFIGGIDLCDGRYDTQEHPLFSTLNTVHHDDFHQPNFPSASIKKGGPREPWHDIHCKLEGHIAWDVLCNFEQRWRKQAGKELQQFLLPSSMFDEYLVPKSSVATTNENETWNVQVFRSIDGGAASGFPQDPDEAAELGLVSGKDNIIDRSIQDGYINAIRRAKNFIYIENQYFLGSSYGWKGSDIKVEDINALHLIPKELSLKIVSKIEARERFSVYIVIPMWPEGVPESESVQAILDWQRRTMEMMYTDIAEAIRRMRIRAHPRDYLTFFCLGNREGMEGKEYIPLETPEPDSDYSRAQKSRRFMIYVHAKMMIDFCLISSVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPRHLSVTSSRGQIYGLRRALWYEHLGDDGDTNIFDNPESVNCIKLVNRLAETNWDIYSQETFDEYRAFHHLMRYPVQVTYDGAITNLPGLECFPDTKARILGSKAQYLPPILTT. 1491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00452 1490 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 994 1034 IPR001736 GO:0003824
Seca3g00452 1490 FunFam Phospholipase D 404 641 - -
Seca3g00452 1490 SUPERFAMILY Phospholipase D/nuclease 1173 1374 - -
Seca3g00452 1490 Gene3D Endonuclease Chain A 1145 1377 - -
Seca3g00452 1490 PANTHER PHOSPHOLIPASE D 719 1479 IPR015679 -
Seca3g00452 1490 SUPERFAMILY Phospholipase D/nuclease 434 677 - -
Seca3g00452 1490 Gene3D Endonuclease Chain A 138 374 - -
Seca3g00452 1490 Pfam Phospholipase D C terminal 1408 1480 IPR024632 -
Seca3g00452 1490 Pfam Phospholipase D C terminal 670 720 IPR024632 -
Seca3g00452 1490 Pfam Phospholipase D Active site motif 262 298 IPR001736 GO:0003824
Seca3g00452 1490 Pfam Phospholipase D Active site motif 994 1034 IPR001736 GO:0003824
Seca3g00452 1490 Pfam Phospholipase D Active site motif 596 622 IPR001736 GO:0003824
Seca3g00452 1490 SUPERFAMILY Phospholipase D/nuclease 106 374 - -
Seca3g00452 1490 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 595 622 IPR001736 GO:0003824
Seca3g00452 1490 ProSiteProfiles C2 domain profile. 664 797 IPR000008 -
Seca3g00452 1490 ProSiteProfiles C2 domain profile. 1 61 IPR000008 -
Seca3g00452 1490 Gene3D Endonuclease Chain A 404 641 - -
Seca3g00452 1490 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 86 IPR035892 -
Seca3g00452 1490 SMART C2_3c 699 796 IPR000008 -
Seca3g00452 1490 Gene3D Endonuclease Chain A 875 1132 - -
Seca3g00452 1490 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 262 298 IPR001736 GO:0003824
Seca3g00452 1490 CDD PLDc_pPLD_like_1 139 312 - -
Seca3g00452 1490 SMART pld_4 1327 1361 IPR001736 GO:0003824
Seca3g00452 1490 SMART pld_4 994 1034 IPR001736 GO:0003824
Seca3g00452 1490 SMART pld_4 595 622 IPR001736 GO:0003824
Seca3g00452 1490 SMART pld_4 262 298 IPR001736 GO:0003824
Seca3g00452 1490 Pfam C2 domain 721 798 IPR000008 -
Seca3g00452 1490 Pfam C2 domain 7 62 IPR000008 -
Seca3g00452 1490 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 720 822 IPR035892 -
Seca3g00452 1490 FunFam Phospholipase D delta 873 1112 - -
Seca3g00452 1490 CDD C2_plant_PLD 711 820 - -
Seca3g00452 1490 FunFam Phospholipase D delta 139 372 - -
Seca3g00452 1490 Gene3D C2 domain 3 96 IPR035892 -
Seca3g00452 1490 Gene3D C2 domain 718 832 IPR035892 -
Seca3g00452 1490 SUPERFAMILY Phospholipase D/nuclease 825 1111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00452 Seca-Chr3 7431095 7439998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00452 2 720 Phospholipase D Gene Family (Wang group) AT3G15730 64.690 0.0 968
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00452 K01115 - gmx:100791688 1259.97