Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00442 ATGACATGGATTGACAGAGATGGCAAGTTCCTCTTGTCAAACAGTGGAGATTTCTCCTTTGGTTTTGTCACCACTCCCAATGACACCACCAAGTTTCTTCTTGTAATTGTCCACATGGCTACCTCCACAGTGATTTGGACTGCAAATAGAGGCTTTCCTGTTTCTAATTCTGATAATTTTGTCTTTGATAATAAGGGCAATGCCTTCTTACAGAAAGATGGAACAACTGTGGTTTGGTCTACAAACACAGGTGGCAAGGGAGCTTCTTCAATGGAATTGCAAGACACAGGGAATTTGGTTTTGCTTGGGAAGGACAATAGTACTGTGATTTGGCAGAGTTTCAACCACCCAACAGATACTTTGATGCCAAATCAGGATTTCACTGAGGGAATGAAACTCACCACTGAACCAAGCACAAACAATTTGACCTATGTTCTTGAGATCAAATCTGGCAATGCCATTCTCTCTGCTGGTTTCAAAACCCCACAAACTTATTGGACTATGCAGAGTGATAACCGCAAAACGATCAATAAAGATGGTGATGTGGTTGCTTCAGCAAATCTTAGTAACAATTCATGGAGATTCTATGATAAAAACAAATCTTTGTTATGGCAGTTCATTTTCTCTGCTGATGCAGGTGTAAATGCCACTTGGATTGCAGTTTTGGGGAAGGAAGGGTTCATCAGTTTCATTAATCTCAACATTGGAGGATCCAATGGTGCTTCCACAACAAAAATACCACAAGATCCTTGTGATACACCACAGCCTTGTGAGAATCCATATTACATATGCACAGGAAATGGGAAGTGCAATTGTCCTTCTGTTCTTCCCAATTGCAAACCAGGTTTTGTCTCTCCTTGTGATAAATCAGGAAATTCTGTTCAGTTCCTGAAAGCTGATGATGGACTCAGTTATTTTGCACTTGATTTCCTTCAGCCCTTTTCTAAAACAGATTTGGCTGGTTGTCAAACATCTTGCAGTGGAAATTGCTCTTGCCTTGCAATGTTCTTCCACACAAGTTCAGGGAACTGTTTCCTTTTGGACAGTATTGGAGGATTTCAGAAACCTGATAGGGATTCTGGTTATGTTTCTTACATTAAGGTGTCTAGTGATGGAGGTTCTGGCACAGGCACAGGGGGTGGTGGAAGCAGCAATAAGAGGACTGTAGTTGTTATGGTCATTGTCATAGTAACATTGCTTGTCATTTCAGGTTTGCTCTTTGTGGGGGTTAGATACTACAGAAGAAAGCAAAAAATGCCTCAGTCTCCTAGAGATAACTCAGAAGAGGACAATTTCTTGGAGAATTTAACAGGTATGCCAATTCGTTATAGCTACAAAGATCTTGAAGTGGCAACTAATAACTTCTCTGTGAGGCTTGGACAAGGGGGTTTTGGGTCAGTTTATAAAGGAGTTCTACCAGATGGGACTCAAATAGCAGTGAAGAAGCTAGAAGGTATTGGCCAAGGGAAGAAAGAGTTTAGAGCTGAAGTTAGCATCATTGGCAGCATTCATCACCTTCATTTGGTAAGGCTTAGGGGATTCTGTGCTGATGGAACTCATAGGCTTCTTGCTTATGAGTTCATGGCAAATGGTTCATTGGATAAATGGATATTCAAGAAAAACAAAGGTGAGTTTCTTTTGGATTGGGATACTAGGTTCAATATAGCCCTTGGAACAGCAAAAGGACTGGCTTATCTGCATGAAGATTGTGACTCTAAGATTGTTCATTGTGACATCAAGCCAGAAAATGTGCTTCTTGATGATCATTTCATGGCTAAGGTTTCAGATTTTGGTCTGGCTAAGCTTATGAATAGAGAACAAAGCCATGTTTTCACAACACTAAGGGGCACAAGGGGATATCTTGCACCAGAGTGGATAACAAACTATGCTATATCAGAGAAAAGTGATGTGTATAGTTATGGGATGGTGTTGCTAGAGATCATAGGGGGAAGGAAAAACTATGATCCTTCTGAAACTTCAGAGAAATCCCATTTCCCAAGTTATGCTTTTAAGATGATGGAAGAAGGAAAACTGAAAGATATATTTGATTCAGAGCTGAAAATAGATGAATGTGATGATAGGGTTCATTGTGCTATCAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCACTGAGGCCTTCCATGACCAAAGTTGTCCAAATGTTAGAGGGTCTATGTACTGTTCCTTCAGATGCCGAAACCGATTTTCCCGCCAAATTACAACGGTCATCTTTCTCAACGGTCAAGTTTCACCCTGACAAGCCCAACGACCATGGTTCTTCTGTTTCAAGTAGCAGAAGGAGAGGGCTAATATGCATAGCCACTTTGCCATGTCTTCTTCCCCTAACTCAAATCCTTGGTTGTCTCCGAGCCAACGCGATGCAGCCAGGTACAAAGGAATATCTTCTCATTAAAGAGGAGGTGAGGAAGGTATTGTCAAAAGGCAAGGCTGCAGGCGTGCTTCGTTTGGTTTTCCACGATGCTGGAACCTTTGAAGTCGATGACAATACAGGTGGTATGAATGGTTCTATAGTCTACGAACTTGAAAGACCTGAAAATGCTGGCCTGAAAAAATCAGTTCTGCAAAAAGCAAAGACTCAGATAGATGCTATCCAACCAGTATCCTGGGCGGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTGAAATATGTGGAGGTCCACCTATCCAAGTATCATTGGGTAGACAAGATTCACTGGAGCCTGATCCTGAAGGCAAACTTCCTGAGGAAACTCTCGATGCTTCTGGTTTGAAGAAATGCTTCAAGAGAAAAGGCTTTTCAACACAAGAACTTGTTGCTTTGTCTGGAGCTCACACTCTTGGAAGTAAAGGTTTTGGAAGCCCTACCTCATTTGACAATTCATATTATAAGGTTCTTTTAGATAAGCCGTGGACATCTCCAGGTGGTATGACGAGTATGATTGGTCTTCCTTCAGATCATGCGCTTGTTGAGGATGATGAATGCTTAAGATGGATTAAAAAATATGCAGACAATGAGAATATGTTCTTCGAAGATTTCAAAAATGCGTATGTCAAGCTGGTGAATTCTGGTGTAAGGTGGAATAGCTTATAA 3096 0.4134 MTWIDRDGKFLLSNSGDFSFGFVTTPNDTTKFLLVIVHMATSTVIWTANRGFPVSNSDNFVFDNKGNAFLQKDGTTVVWSTNTGGKGASSMELQDTGNLVLLGKDNSTVIWQSFNHPTDTLMPNQDFTEGMKLTTEPSTNNLTYVLEIKSGNAILSAGFKTPQTYWTMQSDNRKTINKDGDVVASANLSNNSWRFYDKNKSLLWQFIFSADAGVNATWIAVLGKEGFISFINLNIGGSNGASTTKIPQDPCDTPQPCENPYYICTGNGKCNCPSVLPNCKPGFVSPCDKSGNSVQFLKADDGLSYFALDFLQPFSKTDLAGCQTSCSGNCSCLAMFFHTSSGNCFLLDSIGGFQKPDRDSGYVSYIKVSSDGGSGTGTGGGGSSNKRTVVVMVIVIVTLLVISGLLFVGVRYYRRKQKMPQSPRDNSEEDNFLENLTGMPIRYSYKDLEVATNNFSVRLGQGGFGSVYKGVLPDGTQIAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLRGFCADGTHRLLAYEFMANGSLDKWIFKKNKGEFLLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPSETSEKSHFPSYAFKMMEEGKLKDIFDSELKIDECDDRVHCAIKVALWCIQEDMSLRPSMTKVVQMLEGLCTVPSDAETDFPAKLQRSSFSTVKFHPDKPNDHGSSVSSSRRRGLICIATLPCLLPLTQILGCLRANAMQPGTKEYLLIKEEVRKVLSKGKAAGVLRLVFHDAGTFEVDDNTGGMNGSIVYELERPENAGLKKSVLQKAKTQIDAIQPVSWADMIAVAGAEAVEICGGPPIQVSLGRQDSLEPDPEGKLPEETLDASGLKKCFKRKGFSTQELVALSGAHTLGSKGFGSPTSFDNSYYKVLLDKPWTSPGGMTSMIGLPSDHALVEDDECLRWIKKYADNENMFFEDFKNAYVKLVNSGVRWNSL. 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00442 1031 SMART blect_4 2 117 IPR001480 -
Seca3g00442 1031 CDD PAN_AP_plant 283 368 - -
Seca3g00442 1031 SUPERFAMILY Heme-dependent peroxidases 815 1030 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 ProSiteProfiles Bulb-type lectin domain profile. 1 114 IPR001480 -
Seca3g00442 1031 FunFam S-receptor-like kinase 5 528 732 - -
Seca3g00442 1031 Gene3D - 5 116 IPR036426 -
Seca3g00442 1031 PRINTS Plant ascorbate peroxidase signature 914 931 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 PRINTS Plant ascorbate peroxidase signature 1002 1026 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 PRINTS Plant ascorbate peroxidase signature 874 892 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 PRINTS Plant ascorbate peroxidase signature 932 953 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 PRINTS Plant ascorbate peroxidase signature 818 833 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 PRINTS Plant ascorbate peroxidase signature 836 846 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 PRINTS Plant ascorbate peroxidase signature 893 905 IPR002207 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 ProSiteProfiles Protein kinase domain profile. 453 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00442 1031 SUPERFAMILY Protein kinase-like (PK-like) 433 724 IPR011009 -
Seca3g00442 1031 Gene3D Transferase(Phosphotransferase) domain 1 528 741 - -
Seca3g00442 1031 FunFam L-ascorbate peroxidase 808 923 - -
Seca3g00442 1031 CDD STKc_IRAK 459 726 - -
Seca3g00442 1031 Pfam D-mannose binding lectin 43 128 IPR001480 -
Seca3g00442 1031 ProSiteProfiles Plant heme peroxidase family profile. 818 1031 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 ProSitePatterns Peroxidases active site signature. 818 829 IPR019794 GO:0004601
Seca3g00442 1031 FunFam serine/threonine-protein kinase PBS1-like 421 527 - -
Seca3g00442 1031 CDD B_lectin 4 117 IPR001480 -
Seca3g00442 1031 Gene3D - 806 1025 - -
Seca3g00442 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672|GO:0006468
Seca3g00442 1031 Pfam Peroxidase 807 1006 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 ProSitePatterns Peroxidases proximal heme-ligand signature. 938 948 IPR019793 -
Seca3g00442 1031 SUPERFAMILY alpha-D-mannose-specific plant lectins 41 168 IPR036426 -
Seca3g00442 1031 Pfam Protein kinase domain 457 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00442 1031 SMART serkin_6 453 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00442 1031 FunFam Adenylate/guanylate cyclase 916 1018 - -
Seca3g00442 1031 Gene3D Peroxidase, domain 2 916 1018 - -
Seca3g00442 1031 PRINTS Haem peroxidase superfamily signature 893 905 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 PRINTS Haem peroxidase superfamily signature 818 832 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 PRINTS Haem peroxidase superfamily signature 875 892 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 PRINTS Haem peroxidase superfamily signature 938 953 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca3g00442 1031 ProSitePatterns Protein kinases ATP-binding region signature. 459 482 IPR017441 GO:0005524
Seca3g00442 1031 FunFam Serine/threonine-protein kinase 1 115 - -
Seca3g00442 1031 Gene3D Phosphorylase Kinase; domain 1 416 527 - -
Seca3g00442 1031 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00442 Seca-Chr3 7260343 7268063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00442 396 733 Receptor kinase-like Gene Family AT5G20050 44.444 1.37e-90 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca3g00442 Pkinase 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00442 - - gmx:100791158 1224.92