Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00410 ATGGGAAAGAACACCATGATGAAGCGTTCTGTTCGGATGCACGCTGAGAATACCGGCAACAACGTCTTTCTCAGCCTTATCCCCCTCCTTGTTGGTAATGTGGGTTTGATTTTCACAAAAGGTGACTTGAAGGAGGTTAGCGAGGAGGTTGCTAAGTACAAGGTCGGAGCTCCTGCTCGTGTGGGTTTGGTTGCACCAATTGATGTCGTTGTTCCTCCTGGCAACACAGGGCTCGACCCCTCTCAGACCTCTTTCTTCCAGGTGCTCAACATTCCAACCAAGATTAACAAGGGTACTGTGGAAATTATTACCCCTGTGGAACTCATTAAGAAGGGAGACAAGGTTGGCTCCTCAGAAGCTGCATTGCTTGCCAAGCTAGGCATAAGGCCCTTCTCATATGGACTTGTGGTCCTTTCTGTTTATGATAATGGTTCAGTGTTTAGCCCTGAGGTTCTTGATCTTACTGAGGATGACCTCATTGGGAAGTTTGCTATTGGTGTCTCAATGAGTATTCTTTCCCACAGGCAGACAAGGTCCAAGGAGTACCTCAAGGACCCAAGTAAATTTGCTGTAGCTGCTGCTGCTTCTGGTGCTGCCCCAGCTGCTGCCAAGGAAGAGGAAAAGAAAGAAGAGCCAGCTGAAGAATCTGATAATGATATGGGATTCTCTTTGTTTGACTAA 681 0.4728 MGKNTMMKRSVRMHAENTGNNVFLSLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAIGVSMSILSHRQTRSKEYLKDPSKFAVAAAASGAAPAAAKEEEKKEEPAEESDNDMGFSLFD. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00410 226 Pfam Ribosomal protein L10 1 53 IPR001790 -
Seca3g00410 226 MobiDBLite consensus disorder prediction 202 216 - -
Seca3g00410 226 MobiDBLite consensus disorder prediction 198 226 - -
Seca3g00410 226 Pfam 60s Acidic ribosomal protein 180 225 - -
Seca3g00410 226 SUPERFAMILY Ribosomal protein L10-like 1 79 IPR043141 -
Seca3g00410 226 CDD Ribosomal_P0_L10e 1 130 - -
Seca3g00410 226 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 169 - -
Seca3g00410 226 Gene3D - 59 130 IPR043164 -
Seca3g00410 226 FunFam 60S acidic ribosomal protein P0 58 131 - -
Seca3g00410 226 Pfam Insertion domain in 60S ribosomal protein L10P 59 128 IPR040637 -
Seca3g00410 226 Gene3D - 1 154 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00410 Seca-Chr3 6872731 6873514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00410 1 225 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 71.264 1.58e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00410 K02941 - gmx:547816 350.903