Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00388 ATGGCGTATCACAACCACCACTTGTCCCAAGACCTCCCACTCCACCATTTCACAGAGCAACAACAACACCATAACCACTCTCTAACTGACAACTCCTTGCGTCCCATTTTGGAAGACCAGTTAGGTGCATCCCCTGACCCTACTACCAAACCTACCTCCGATTCTCACCACCCTCTCCAAACCGCACCCAATTGGCTCAACAACGCTCTTCTTCGCACTCACTTCACCGACAACAACAACAACGAAAACTCCTCCAACGCTGCCAACAATAACAACGCAACCAATTTCCTCAACCTCCACACCACCGCTGCTTCCGACTCCACCGCCGGCGCTGCTCCCCAATCCTCCGGCCAATGGCTCTCCCGGACGATCCTCCACCGGAACCACAGCGAAGTCATCGACGATGTCCCTGCCGCCGGTGACTCCATCATCGCCGGCGCTGAGGCAGTCGCCGGCGGCGAGAAGAGCGAGGTAGTAGCGGCGGAGATGAACTGGCAGAATGCGAGGTACAAGGCAGAGATTCTAGCGCATCCGATGTACGAACAACTTCTTTCTGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTTGACCAGTTGCCGAGGATCGATGCTCAGCTTGAGCAGTCACAGAATGTGGTTGCCAAGTACTCTGCGTTTGGACAGGGCATGCTAGGGGATGATAATAAGGAACTCGATCATTTCTTGTCGCACTATGTTTTGCTGCTATGTTCCTTCAAAGAACAGCTCCAACAACATGTTCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGGGAAGGTACAGGAGCAACAATGTCTGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTTCAGATAGCATGGGATTTGGCCCTCTTATTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAGTTAAAGCATGAATTGAAACAGGGTTACAAAGATAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCAAGATTGGTGCAGGAAACGGGTTTGCAATTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTAATGTCTTGAAGAGCAAGCGCAAAAGGTGA 1296 0.5015 MAYHNHHLSQDLPLHHFTEQQQHHNHSLTDNSLRPILEDQLGASPDPTTKPTSDSHHPLQTAPNWLNNALLRTHFTDNNNNENSSNAANNNNATNFLNLHTTAASDSTAGAAPQSSGQWLSRTILHRNHSEVIDDVPAAGDSIIAGAEAVAGGEKSEVVAAEMNWQNARYKAEILAHPMYEQLLSAHVACLRIATPVDQLPRIDAQLEQSQNVVAKYSAFGQGMLGDDNKELDHFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGSDSMGFGPLIPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSNVLKSKRKR. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00388 431 SMART KNOX1_2 168 212 IPR005540 GO:0003677|GO:0005634
Seca3g00388 431 SMART KNOX2_2 221 277 IPR005541 GO:0003677|GO:0005634
Seca3g00388 431 SMART HOX_1 356 421 IPR001356 GO:0003677
Seca3g00388 431 MobiDBLite consensus disorder prediction 38 62 - -
Seca3g00388 431 SMART ELK_2 334 355 IPR005539 GO:0003677
Seca3g00388 431 FunFam homeobox protein knotted-1-like 3 isoform X1 355 416 - -
Seca3g00388 431 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Seca3g00388 431 ProSiteProfiles ELK domain profile. 334 354 IPR005539 GO:0003677
Seca3g00388 431 SUPERFAMILY Homeodomain-like 356 420 IPR009057 -
Seca3g00388 431 Pfam KNOX2 domain 228 276 IPR005541 GO:0003677|GO:0005634
Seca3g00388 431 Pfam KNOX1 domain 170 211 IPR005540 GO:0003677|GO:0005634
Seca3g00388 431 MobiDBLite consensus disorder prediction 276 295 - -
Seca3g00388 431 CDD homeodomain 357 418 IPR001356 GO:0003677
Seca3g00388 431 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
Seca3g00388 431 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 416 - -
Seca3g00388 431 Pfam ELK domain 334 355 IPR005539 GO:0003677
Seca3g00388 431 Gene3D - 353 427 - -
Seca3g00388 431 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00388 Seca-Chr3 6614927 6619175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00388 1 431 Homeobox Transcription Factor Family AT5G25220 65.142 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca3g00388 KNOX2 4.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00388 - - pcin:129303573 645.195