Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00381 ATGCTGCTTCTTGTTATTCACGAACCCATTTGGGTTCATGTCACTGCAGACCCTCCTGTTTCTTCACCTCAACTCACTCCACTTTCCACCACCATGTCTACTTTCTCCCCAGTTTCAATAGGTACTGAGGTGAAGGAGGAGCACCACCAAAGAGATTTACACAAGAAAGTGGTAATAGGTCTTGTTGTAGCCAGTAGTGCACTTGGTACAATCATTTTGAGTTTGTTATGCTTCTGGGTATATAAAATCAAGTATGTGTCAAAATCCAATAAGAAAATTGTTCAAAGTTCAGATGCAGAGAAGGGGCTCCCTTTAGCACCATTTTTGAGTAAAATCAGTTCCATCAAGTTGGTTGGTATGAAAGGGTCTCTTCCAATAATTGATTATGAACAAATAGAAAAATCCACAAATAATTTTGAGGAAGGTAACATCTTGGGTGAGGGCGGTTTTGGACGTGTTTACAAGGCTCGATTGGATGATAATTTGGATGTTGCCGTCAAGAAACTACGCTGTGAAAGTCAAAATGCTACCAGAGAATTTGAGAACGAGGTGGATTTGTTAAGTAAAATTCAGCATCCAAATATAATTTCTTTACTGGGTTGTAGCATTGATGACAACACAAAGTTTATTGTGTATGAGTTGATGCAAAATGGGTCCTTGGAAGCTCAGTTACATGGACCATCTCGTGGCTCAGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACTGCAAGAGGATTAGAATATCTGCATGAGCACTGTCACCCTGCAGTGATCCATAGAGATATGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCAATAACTAATGGGTCCCAAAACAAGAACATTAAGCTTTCAGGGACATTGGGGTACGCCATGCCGCATCTCACTGATAGGTCCAAGATTCCACACATTGTGGATCCAGTGATTAAGGATACAATGGATCTCAAGCACTTATACCAGGTTGCTGCTGTAGCTGTGTTGTGCGTGCAACCAGAGCCAGGTTATCGCCCGCTGATCACAGATGTTCTTCACTCTCTTGTCCCTCTTGTTCCCGTGGAGCTTGGAGGAACACTCAGAGTTTCACGAGTGATACAGCATGTCTCTCTTGCTGATCCACCTCAGAATTCCAGTCATTGA 1179 0.419 MLLLVIHEPIWVHVTADPPVSSPQLTPLSTTMSTFSPVSIGTEVKEEHHQRDLHKKVVIGLVVASSALGTIILSLLCFWVYKIKYVSKSNKKIVQSSDAEKGLPLAPFLSKISSIKLVGMKGSLPIIDYEQIEKSTNNFEEGNILGEGGFGRVYKARLDDNLDVAVKKLRCESQNATREFENEVDLLSKIQHPNIISLLGCSIDDNTKFIVYELMQNGSLEAQLHGPSRGSALTWHMRMKIALDTARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLAITNGSQNKNIKLSGTLGYAMPHLTDRSKIPHIVDPVIKDTMDLKHLYQVAAVAVLCVQPEPGYRPLITDVLHSLVPLVPVELGGTLRVSRVIQHVSLADPPQNSSH. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00381 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Seca3g00381 392 FunFam Os07g0541700 protein 215 303 - -
Seca3g00381 392 SMART serkin_6 139 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00381 392 Pfam Protein kinase domain 139 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00381 392 Gene3D Transferase(Phosphotransferase) domain 1 215 315 - -
Seca3g00381 392 ProSiteProfiles Protein kinase domain profile. 139 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00381 392 SUPERFAMILY Protein kinase-like (PK-like) 117 360 IPR011009 -
Seca3g00381 392 PANTHER OS01G0750732 PROTEIN 305 363 - -
Seca3g00381 392 ProSitePatterns Protein kinases ATP-binding region signature. 145 168 IPR017441 GO:0005524
Seca3g00381 392 Coils Coil 391 392 - -
Seca3g00381 392 FunFam Protein kinase superfamily protein 106 214 - -
Seca3g00381 392 Gene3D Phosphorylase Kinase; domain 1 108 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00381 Seca-Chr3 6453283 6456040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00381 21 296 Receptor kinase-like Gene Family AT1G80640 46.931 7.41e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Seca3g00381 Pkinase 3.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00381 - - gmx:100785380 528.48