Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00380 ATGAGGCAGAACAGGCCCATCCCCTACTGGATTCGCATGAGGACCGATAACACCATCAGGTACAACGCTAAGCGCCGCCACTGGCGTCGCACCAAGCTTGGATTCTGA 108 0.5648 MRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF. 36
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00380 35 PANTHER RIBOSOMAL PROTEIN L39E 1 35 - -
Seca3g00380 35 FunFam 60S ribosomal protein-like L39 1 35 - -
Seca3g00380 35 Pfam Ribosomal L39 protein 1 33 IPR000077 GO:0003735|GO:0005840|GO:0006412
Seca3g00380 35 ProSitePatterns Ribosomal protein L39e signature. 14 30 IPR020083 GO:0003735|GO:0005840|GO:0006412
Seca3g00380 35 SUPERFAMILY Ribosomal protein L39e 1 34 IPR023626 -
Seca3g00380 35 Gene3D Ribosomal protein L39e 1 35 IPR023626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00380 Seca-Chr3 6450119 6451834 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00380 1 35 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 94.286 4.25e-20 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00380 K02924 - tcc:18587895 81.2629