Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00371 ATGGAAACACAGAGCCATGAGCCTTATTATCTCTCTGCTGAAGAGGCTCCACCAAGTCCAACTACACCACCATTGCAGAATCCACTTGAAAAGAAACAACTTGAGGAAGAAGATAATCAAGAAAAGGAAGCAAAGTTAGATACTTTATTGGATCTGAATGTCCCTGGTGATGATGATAATTGTTCTCTTGATAAGTGCTTGGATTTGTCCAAGGAAGAAAACCCTTGTGGTAATACTAATAATTCTGATGCAGCAGAGCCAAGAGTGTTCTCTTGTAACTATTGCCAGAGAAAATTCTACAGTTCACAAGCACTTGGGGGACACCAAAATGCTCACAAGAGAGAGAGGTCAATTGCAAGAAGAGGTCAGAGATTAGCAACAAACATGATGATGGCTTCAACATCTTCCTCTTATGGGAATATTCCCTTTCTTCATAGGTATCCAAGCATGGCATCACTACCCCTTCATGGTTCTTGTAGTAATAGACCACTTGGAATTCAAGCTCATTCCATGATTCAAAAGCCTTCTCATTTTGGGTTTGGAAGCAGTTATGGACAACAACATGGATGGTCAAGACCACCCCTTATTGATCAACAACCTGGAATAGGGAAACTAGTGATGGAAAGTTGTCACAAAACAGGGCTATCATCAAAGGGTAGTAGCAGTAGTGTTGGTAGATTTGAAGTGGTAAAGAACATGATCAATTCAACTTCCAATGAAGAAATTAGTGGATATAATTCAACTCGTTTGAAGACTAATCAAGAAGAGATGAGGCACCTTGACTTATCCTTAAAGCTCTAA 801 0.3983 METQSHEPYYLSAEEAPPSPTTPPLQNPLEKKQLEEEDNQEKEAKLDTLLDLNVPGDDDNCSLDKCLDLSKEENPCGNTNNSDAAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIARRGQRLATNMMMASTSSSYGNIPFLHRYPSMASLPLHGSCSNRPLGIQAHSMIQKPSHFGFGSSYGQQHGWSRPPLIDQQPGIGKLVMESCHKTGLSSKGSSSSVGRFEVVKNMINSTSNEEISGYNSTRLKTNQEEMRHLDLSLKL. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00371 266 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Seca3g00371 266 Gene3D Classic Zinc Finger 73 139 - -
Seca3g00371 266 MobiDBLite consensus disorder prediction 1 43 - -
Seca3g00371 266 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 266 IPR044246 GO:0009788
Seca3g00371 266 SUPERFAMILY beta-beta-alpha zinc fingers 87 117 IPR036236 -
Seca3g00371 266 Coils Coil 32 52 - -
Seca3g00371 266 FunFam Zinc finger protein 2 68 137 - -
Seca3g00371 266 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00371 Seca-Chr3 6267273 6268073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00371 35 266 C2H2 Transcription Factor Family AT5G10970 40.984 3.52e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g00371 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00371 - - gmx:100783199 278.1