Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00370 ATGGTAGAACTGAAGCAGAGGATCCTAACCTCTCTCTCCAAGCTTTCAGACAGAGACCGTGTCGTCTCTACATGGGCTAGTGTAGAAAGTGTTAGCGTTCCATCTTCTCAATGGCAATTCTATTGTTCTCTACCCTCCACCAACAAGCTCTTTGTTGGAGGTCCCTCTCTATCTCTCTCTATTCGCCTCTTGTTATGCCCAATCAGGACCTGTATTAACACTGATAGTGTTTCAGGGCTGTCATGGTCAGTCGATGAGAAATCTCTCAAAGACGCTTTCTCTTCGTTCGGAGACGTCACTGAAGCGACCTTATTGCTTGTTCTAATTCATCAGGTGAAGGGAGAACCCAATATTTCTTACATCTGTTCAAGATACTATCGAGCCCCTGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTATGTGATGGCTGAGTTGCTTCTTGGATAG 474 0.4409 MVELKQRILTSLSKLSDRDRVVSTWASVESVSVPSSQWQFYCSLPSTNKLFVGGPSLSLSIRLLLCPIRTCINTDSVSGLSWSVDEKSLKDAFSSFGDVTEATLLLVLIHQVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSTGYVMAELLLG. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00370 157 Gene3D - 76 112 IPR012677 -
Seca3g00370 157 Pfam Protein kinase domain 117 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00370 157 SUPERFAMILY Protein kinase-like (PK-like) 113 157 IPR011009 -
Seca3g00370 157 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 112 157 - -
Seca3g00370 157 Gene3D Transferase(Phosphotransferase) domain 1 122 155 - -
Seca3g00370 157 ProSiteProfiles Protein kinase domain profile. 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00370 157 SUPERFAMILY RNA-binding domain, RBD 77 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00370 Seca-Chr3 6234074 6236374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00370 97 156 Core Cell Cycle Gene Families AT1G73690 41.667 7.61e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca3g00370 Pkinase 7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00370 K03083 - csin:114300183 105.145