Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00369 ATGGATGATTCCAGTGACGAGTTTCCCATAGGAATGCGTGTTCTTGCCGTCGACGATGACCCCACTTGCCTCATGGTTTTGGAAACTCTACTCCGAAGATGTCAATATCACGTTATGGCTGGCGGTGCAGTAACCACAACTAGTCAAGCAATAACGGCATTGACACTGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGACTTGAGATGGACCTTCCTGTCATAATGTTGTCTGCAAATGGTGATACAAAGCTAGTGATGAAGGGAATTTCTCACGGAGCCTGTGATTATCTGCTGAAACCTGTGAGAATAGAGGAACTAAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGATTCAAAGGAGAAGAACAAAACCAGCAACCTAGACAAATCAACTTTTGATAGCAGTAATGGAACAGGAAACACAGATCAAAATGGAAAAATGTCTAAAAAAAGGAAGGATGAAGATGAAGACGAGGAGCAAGAGAATGGTCAAGACAATGAGGACCCATCAACCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAATGATAGCATAAGTGCCACTTGGGATAAATATCATGTCACAATTATCATTCAAATTTTATGCTTTGTCATGAAGTTTTCTATCAGTGAACATGAGTGTGGGCCTCAGGATATTGTTGTTTTGCTGGCAGAGGCTAAGTATAGGCTTTATCTGAAAAGAATTAGCTGCGTGGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATAAGTCCTATTTGAGAATGGGTTCTGTGAGTGGGTTTGGACATTTGCAAACATTGAGTGGTTCTGGACAGTTTCAAAATAACGCTTTCAAATCCTTTCCATCTACTGGGATAATTAGTAGATTGAACACTCCTGCTGGTCTGAACATGCATGGATTTCCTTCCTCCGGAGTACTTCAGTTGGGTCAATCACAAAATTTGAACAACTCCTCTAATGATCAACTTAAGTTCCAGTCAACCATAATTACTGCTAATCAGAATGGTGTTCAGGGAATACCGGTGTCCGTAGGGCTTGATCAATTGCAAAACAATAAGGGTGTTACTTCTGTTCAAAACCTGACCACTGCTTTTGACGTGAAAACAACTTTTCCCATCTCAAATAAACTACCAGATCAAAGACCAAGAGTAACCACCTCTGGCTCTCACAGACCACTTTTGGGTATCTCAAACAATGCCTTGATGTTGGAAACACACCCTCAAGATACACAAGGGGGTACAGGATATAAAAGTTCATCTTCTTCAGTGGCCTCTCAACATTCAGAATTTTCTTTCTCTTTGCTGGATCAAGGTAGGTATAGTGATAATTGGTCAAGTGCTGTGCAGCCATCTGGGATCCAGACAAATTCGTACCCTCCAAGTGAGTGTTTTAAACACACAGCTATACCTCCTTCAGATAACATGGCTTCTTTACCCTTGCAAGGAGGGAATCCCAGTGGTCCACCCATCACTTCACTGTCCAGTCAATCCCATGATTCAATGACAGCTATGCATTCCCAAGGAGTGATTTTTACTAATACACCTGGGCATATAAACAGTAATGTGCCATTTCAAGGGTGGGATGACCATAATCAGGATGCTACTTGCCATTCAAATGTTATTGACGGATCAATAAACTCTTTGGCTCCAGTTAATGGTGCTGTTATTACAGCAGGTCATACTCCAACTAACTCAACCTTACACAGGAACTTGGACTTTAATTTTTGTGATCCCTTGCAAATGAAGCATGATGGATTCCTGGAGTTAACCGAAGACACCTCATTGAAACAACATGGGGGGAATATCATGAACCAACAGAAGTCCCAACAAAGTTGCTTCTCTAATAATCTTGGCTCACTGGAATACTTGGTCAGTTCAATGATGGAACAGGAGCAAGATAAGATGAAATTATTGGGTGGAGACCTCATTTGCCATAATTATTCCGGTGGGGTATCTATGTGA 2091 0.4213 MDDSSDEFPIGMRVLAVDDDPTCLMVLETLLRRCQYHVMAGGAVTTTSQAITALTLLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKFDSKEKNKTSNLDKSTFDSSNGTGNTDQNGKMSKKRKDEDEDEEQENGQDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDNDSISATWDKYHVTIIIQILCFVMKFSISEHECGPQDIVVLLAEAKYRLYLKRISCVANQQASMVAALGSADKSYLRMGSVSGFGHLQTLSGSGQFQNNAFKSFPSTGIISRLNTPAGLNMHGFPSSGVLQLGQSQNLNNSSNDQLKFQSTIITANQNGVQGIPVSVGLDQLQNNKGVTSVQNLTTAFDVKTTFPISNKLPDQRPRVTTSGSHRPLLGISNNALMLETHPQDTQGGTGYKSSSSSVASQHSEFSFSLLDQGRYSDNWSSAVQPSGIQTNSYPPSECFKHTAIPPSDNMASLPLQGGNPSGPPITSLSSQSHDSMTAMHSQGVIFTNTPGHINSNVPFQGWDDHNQDATCHSNVIDGSINSLAPVNGAVITAGHTPTNSTLHRNLDFNFCDPLQMKHDGFLELTEDTSLKQHGGNIMNQQKSQQSCFSNNLGSLEYLVSSMMEQEQDKMKLLGGDLICHNYSGGVSM. 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00369 696 CDD REC_typeB_ARR-like 14 134 - -
Seca3g00369 696 SMART REC_2 12 130 IPR001789 GO:0000160
Seca3g00369 696 ProSiteProfiles Response regulatory domain profile. 13 134 IPR001789 GO:0000160
Seca3g00369 696 PIRSF RR_ARR_type-B 1 224 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca3g00369 696 PIRSF RR_ARR_type-B 265 693 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca3g00369 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 238 IPR045279 GO:0009736
Seca3g00369 696 Pfam Response regulator receiver domain 14 128 IPR001789 GO:0000160
Seca3g00369 696 Gene3D - 202 272 - -
Seca3g00369 696 Gene3D - 12 201 - -
Seca3g00369 696 MobiDBLite consensus disorder prediction 141 198 - -
Seca3g00369 696 SUPERFAMILY CheY-like 11 141 IPR011006 -
Seca3g00369 696 MobiDBLite consensus disorder prediction 151 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00369 Seca-Chr3 6212901 6218411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00369 3 685 Response Regulator Gene Family AT2G25180 38.494 6.65e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g00369 Response_reg 2.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00369 - K14491 gmx:100809002 953.74