Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00363 ATGGCGCAGTGTCACCGGAACAACGCCGGATCAATCGTTATCGACCACCGTCACTCAGCCAAAAATGCAACCGCCGGCAGCCACTTCCGCCTCTGGAATTCCCTCTCTGCCTCCTCGTTCCGCCGCATTATCTTCGACGCCGTCAGCTGTGGCGGCAGCTCTCGTCACCAGCGCCACCACGACGACGAATACGCATGTAGCTCCGCCACATCGACGGCGAGCTTAGCCTCCGGGAGCTACAGGGAGAAGCGGCAAGTGGAAGAGGAGAAGTCGGAGAAGCTATTGGATCTTCTGAACATAACGGAATGCGAAACGAACGCGGACGCGAAGAAGAAGGAAGAGGCATTGGCGGAGCTGAAGGAAGTGGTGAAGGAGTTGCGTGGAGAAGACTTGACGAAGCGGCAAATAGCGGCGGCGAGAGTGAGGTCACTTGCGAAGGAAGATTCCGAAGCGAGAGGAACACTCGCAATGCTTGGAGTAATTCCTCCACTCGTTGGAATGCTTGATTTGGAAGATTCACATTCTCAGATCGCTTCGCTCTATGCCTTACTCAATCTCGGGATCGGCAACGATGCAAATAAAGCCGCCATTGTCAAAGTTGGCGCTGTTCACAAGATGCTCAAGCTCATTGAATCGGCGGAAGCTCCAGATTCATCGGTATCTGAAGCAATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAACAAGCCAATAATTGGATCCTCCGGTGCAATACAATTCCTAGTTAGAAGTCTTCAAAATTTAGACAATAAAAGTGGCTCACAAGTAAAGCAAGATGCTCTCCGAGCTCTGTACAATCTCTCAATCTTTCAGACCAACATTTCATTCGTGTTGGAAACTGATTTGGTCTCGTTTCTGATAAATGCAATAGGAGATATGGAAGTGAGTGAAAGAGTCCTTTCAATCCTGAGCAATTTGGTGTCAACTCCGGAGGGTAGAAAAGCTATTAGTGCTGTGAGGGATGCGATCTCAATTCTGGTGGATGTATTGAATTGGACAGATTCTCCACAATGCCAAGAAAAAGCATCATACATTTTGATGATTATGGCACACAAAGCGTATGGTGATAGACAGACCATGATTGAGGCAGGGATTGTATCTTCACTGCTTGAGTTGACACTCCTGGGTACCACATTGGCACAGAAAAGGGCTTCAAGGATATTGGAATGCTTGAGGATAGACAAAGGGAAACAGGTTTCTAGAAGCTTTGGAGGAAACTTAGGTGCTACTGTCTCTGCACCTATTTGTGCCTCTTCATCATCTTTTACAAAGCCAGATGGAGGATTGGTGGAGGAGGAAGATATGATGAGTGAGGAAAAGAAAGCAGTGAAGCAATTGGTCCAGCAGAGTTTGCAGAACAACATGATGAAAATTGTGAAGAGGGCCAACTTGCGTCAGGATTTTTGTAGTGTTGATGCCTCCCAATCAGTGGTATGGCATGAAAATTTGGAAAACCTTTGGATTCCATGTGTTGAGTTTTCAGGAATCTCTGGATTAGCAGAGTTGAATGCCACGGAAATAAATGCTAAATTGGATCTGTTTGAATGGAAAGATGACCTGTTCGTCGCGAATAAGTCACCAATGGCATTTTCTCCGCACTACGTACGCAACAAGATGTACTTCGTGGGGTCTACAGCCATATGTAATGTTATCTTCTCTTCTGAGTGCTTTGATTTTGTTGACTTTTGGTGTAAATAA 1725 0.4643 MAQCHRNNAGSIVIDHRHSAKNATAGSHFRLWNSLSASSFRRIIFDAVSCGGSSRHQRHHDDEYACSSATSTASLASGSYREKRQVEEEKSEKLLDLLNITECETNADAKKKEEALAELKEVVKELRGEDLTKRQIAAARVRSLAKEDSEARGTLAMLGVIPPLVGMLDLEDSHSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESAEAPDSSVSEAIVANFLGLSALDSNKPIIGSSGAIQFLVRSLQNLDNKSGSQVKQDALRALYNLSIFQTNISFVLETDLVSFLINAIGDMEVSERVLSILSNLVSTPEGRKAISAVRDAISILVDVLNWTDSPQCQEKASYILMIMAHKAYGDRQTMIEAGIVSSLLELTLLGTTLAQKRASRILECLRIDKGKQVSRSFGGNLGATVSAPICASSSSFTKPDGGLVEEEDMMSEEKKAVKQLVQQSLQNNMMKIVKRANLRQDFCSVDASQSVVWHENLENLWIPCVEFSGISGLAELNATEINAKLDLFEWKDDLFVANKSPMAFSPHYVRNKMYFVGSTAICNVIFSSECFDFVDFWCK. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00363 574 Gene3D - 301 418 IPR011989 -
Seca3g00363 574 Gene3D - 116 300 IPR011989 -
Seca3g00363 574 Coils Coil 109 129 - -
Seca3g00363 574 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 277 IPR000225 GO:0005515
Seca3g00363 574 SMART arm_5 148 188 IPR000225 GO:0005515
Seca3g00363 574 SMART arm_5 279 317 IPR000225 GO:0005515
Seca3g00363 574 SMART arm_5 190 233 IPR000225 GO:0005515
Seca3g00363 574 SMART arm_5 234 278 IPR000225 GO:0005515
Seca3g00363 574 SMART arm_5 321 360 IPR000225 GO:0005515
Seca3g00363 574 SUPERFAMILY ARM repeat 118 405 IPR016024 -
Seca3g00363 574 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 479 - -
Seca3g00363 574 Coils Coil 438 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00363 Seca-Chr3 6117570 6120623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00363 81 410 U-box Gene Family AT2G23140 30.816 1.39e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00363 - - gmx:100818576 617.846