Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00335 ATGGGAATATATCTCAGTACTCCCAAAACAGAAAAGTTTTCTGAAGATGGTGAAAATGACCGTCTTAGATATGGTTTATCATCCATGCAAGGGTGGCGTGCAACAATGGAAGATGCTCATGCTGCATATACTGATCTGGATGAGTCCACTTCGTTTTTTGGTGTCTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCTAAGTTTCTTCACCAACAGGTGCTCAAAAGTGAAGCATACTTAGCTGGAGATGTAGGAACCGCTCTTCAGAAAGCTTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAAGGGATGGAGGGAATTATCAAACTTGGGGGATAAGATAAACAAGTTTACTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAGGCAGTGATGGTAATAACCAAGTTGATGATTGGGCTTCTGAGGAGGGGCCTCACTCAGATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAGTTATTAGAAATGGCCAACTTGTCGTTGCAAATGCTGGTGATTCACGATGTGTACTATCTAGGAAGGGCCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAAATTGAGAGCGAAAGAATCTTAAGAGCTGGTGGTTTTATTCATGCAGGACGAATTAATGGCAGTTTAAATCTTGCAAGAGCTATTGGTGACATGGAATTTAAACAAAATAAATTTCTCCCGCCTGAAAAACAAATTGTGACTGCCAATCCGGATATAAACACTGTTGAGCTTTGTGATGAAGATGAATTTATGGTGCTAGCCTGTGATGGCATATGGTATTCTTCTGATGCTTGCATATTGTTGACATTATATGCCCCTTCACAACGCGGCCTTAATATTAATAATAATAACATATTTCTTCTAACTATTTTCAGGGATTGCATGTCAAGCCAACAATTGGTAGATTTTGTTCATGAACAATTGCGCTCGGAAACAAAACTTTCTGCAGTGTGTGAAAGAGTACTTGACCGGTGTTTGGCACCATCAACAGCTAATGGCGATGGATGTGATAACATGACTATGATCTTGGTGCAGTTCAAAAGACCTGCCCAGTCTAGTGCACCAGCAGAAGAGCAATCCTCATCAAATGGACAAGCTGAAACAGAACCAAAACTGGAAAGAAGTGAAATTTAA 1182 0.4112 MGIYLSTPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQVLKSEAYLAGDVGTALQKAFLRMDEMMRGQKGWRELSNLGDKINKFTGMIEGLIWSPRGSDGNNQVDDWASEEGPHSDFAGPTSGSTACVAVIRNGQLVVANAGDSRCVLSRKGQAYNLSRDHKPDLEIESERILRAGGFIHAGRINGSLNLARAIGDMEFKQNKFLPPEKQIVTANPDINTVELCDEDEFMVLACDGIWYSSDACILLTLYAPSQRGLNINNNNIFLLTIFRDCMSSQQLVDFVHEQLRSETKLSAVCERVLDRCLAPSTANGDGCDNMTMILVQFKRPAQSSAPAEEQSSSNGQAETEPKLERSEI. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00335 393 Gene3D - 1 363 IPR036457 -
Seca3g00335 393 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Seca3g00335 393 SMART PP2C_4 13 360 IPR001932 -
Seca3g00335 393 MobiDBLite consensus disorder prediction 364 393 - -
Seca3g00335 393 ProSiteProfiles PPM-type phosphatase domain profile. 23 362 IPR001932 -
Seca3g00335 393 CDD PP2Cc 23 362 IPR001932 -
Seca3g00335 393 PANTHER PROTEIN PHOSPHATASE 2C 18 361 IPR015655 GO:0004722|GO:0006470
Seca3g00335 393 MobiDBLite consensus disorder prediction 368 384 - -
Seca3g00335 393 Pfam Protein phosphatase 2C 155 275 IPR001932 -
Seca3g00335 393 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Seca3g00335 393 SUPERFAMILY PP2C-like 3 364 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00335 Seca-Chr3 5699894 5706347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00335 1 374 PP2C-type Phosphatase Gene Family AT2G25070 70.321 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00335 K17499 - gmx:100787778 623.624