Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00320 ATGGGAAACTGTTTCGGAAAGCCAGATGATGACAACAACATGATTCACAGTAAGCAGACTACTACAACCACCACACACACTTCTCCTGCAGAAAGAAACAATATTGAGAAGGAAAGGGTTTCAGATGGAGAAAAGAGTAGAGGGAAGATCGTTACGCCGAATCTGAAAATGTTCACATTGGATGAGTTGAAAAGTGCCACAAGAAACTTCAGACCAGACACGGTGGTTGGGGAAGGTGGTTTTGGGCGTGTTTTCAAAGGATGGATTGATCCTAATACCTTCAAGCCTTCCAGAGTTGGCGTTGGAATCCCCGTTGCTGTCAAGAAGTCTAACCCTGATAGCCTCCAAGGTCTACAAGAATGGCAGAGTGAAGTGAAGTTTTTGGGGAAGTTCTCTCATCCAAACCTGGTTAAACTACTTGGCTTCTGCTGGGAGGAAAATCAATTCCTGCTCGTTTATGAATACATGCAAAAGGGCAGCTTGGAAAGCCACCTCTTCAGAATTGCAGGAGGCCCTGAACCACTTTCGTGGGATATAAGGCTCAAGATAGCCATAGGAGCTGCCAGAGGTCTGGCTTTCTTGCATACGTCAGAAAAATCTGTCATCTATAGAGACTTCAAATCCTCCAACATTTTGCTTGACCAAAATTTTAATGCAAAGCTGTCAGACTTTGGGTTGGCAAAGTTGGGCCCCGTCAACGGTAGATCCCACATAACCACGCGGGTCATGGGCACCTATGGTTATGCTGCCCCTGAGTACATGGCCACAGGTCCTTTCTTTTTCTTACTCTTACTCAAACACATACATAGTCATCTCTATGTGAAAAGCGACGTATATGGATTTGGTGTTGTTCTGTTAGAATTGTTAACAGGCTTAGCAGCACTGGACACAAATCGGCCAACGGTTGAGCAGAATCTGGTGGAATATACTAAGCCATGTCTAAGTGACAAAAAGAAACTAAAAAGGATAATGGACCCAAGGATGGACGAACAGTACTCAATAATAGCAGCACTTCAAATAGCCCATCTTATTCTGAAATGTTTAGAATCTGACCCAAAAAACAGACCGTCTATGGAGGAGGTTTTGGGAATCTTAGAGAAGGCCCAAAACATCAAATATAAGCCCAAAGTGAAGAAAGCCAGTGCAGTGCATCAAAGAAAGAGATCACCAGAGGAGCATCCCACACAAAATCAACTTCGCACTCCTATTCATCACAACAACAATGGTTACTCCAAATCACGAACTCATTCCCCCCAATAG 1260 0.4389 MGNCFGKPDDDNNMIHSKQTTTTTTHTSPAERNNIEKERVSDGEKSRGKIVTPNLKMFTLDELKSATRNFRPDTVVGEGGFGRVFKGWIDPNTFKPSRVGVGIPVAVKKSNPDSLQGLQEWQSEVKFLGKFSHPNLVKLLGFCWEENQFLLVYEYMQKGSLESHLFRIAGGPEPLSWDIRLKIAIGAARGLAFLHTSEKSVIYRDFKSSNILLDQNFNAKLSDFGLAKLGPVNGRSHITTRVMGTYGYAAPEYMATGPFFFLLLLKHIHSHLYVKSDVYGFGVVLLELLTGLAALDTNRPTVEQNLVEYTKPCLSDKKKLKRIMDPRMDEQYSIIAALQIAHLILKCLESDPKNRPSMEEVLGILEKAQNIKYKPKVKKASAVHQRKRSPEEHPTQNQLRTPIHHNNNGYSKSRTHSPQ. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00320 419 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Seca3g00320 419 MobiDBLite consensus disorder prediction 1 48 - -
Seca3g00320 419 CDD STKc_IRAK 76 367 - -
Seca3g00320 419 PANTHER OS01G0588500 PROTEIN-RELATED 29 369 - -
Seca3g00320 419 MobiDBLite consensus disorder prediction 395 419 - -
Seca3g00320 419 Gene3D Transferase(Phosphotransferase) domain 1 156 391 - -
Seca3g00320 419 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Seca3g00320 419 ProSiteProfiles Protein kinase domain profile. 70 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00320 419 SUPERFAMILY Protein kinase-like (PK-like) 50 366 IPR011009 -
Seca3g00320 419 MobiDBLite consensus disorder prediction 31 46 - -
Seca3g00320 419 MobiDBLite consensus disorder prediction 15 30 - -
Seca3g00320 419 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 379 - -
Seca3g00320 419 Gene3D Phosphorylase Kinase; domain 1 40 155 - -
Seca3g00320 419 MobiDBLite consensus disorder prediction 375 419 - -
Seca3g00320 419 Pfam Protein kinase domain 73 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00320 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00320 Seca-Chr3 5392058 5394705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00320 11 365 Glycoside Hydrolase AT3G07070 42.697 4.02e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca3g00320 Pkinase 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00320 - - aprc:113865973 606.29