Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00317 ATGAGCTGCTTTTCTTGCCTCTTTTCTCGTCGGAAAGATGTCAGTAGGGTTGAAGTTGATAATGGCACTCGATCTGCTACTTCTTCAGGGAACGGGGGAGTCAATGCTGCCGCTACTGATAAGGAGGGTGAAAGGAAGAAAGAATCCTCAGAGGGGAAGGGGAAGAGTGGGAGCAGTAGCAAAAGCAGTACGGCAGCAGCTAGTTTTGGATTTCGTGAGCTTGCAGCGGCAACAAGAGGTTTTAAGGAAGTGAACTTGATTGGGGAAGGTGGTTTTGGAAGAGTTTACAAGGGTCGTCTCTCTACAGGAGAGGCAAGTTATAGGGTTTTTGGTCATTTGAATATTTTCACTTGTCTTATTATTATTATGAATTATTGTCTAAAAAAGAAGAATTATCTACAGGTTGTTGCCATAAAACAATTAAATCATGATGGTCATCAAGGTTTTCAGGAATTTGTGACAGAGGTTCTTATGTTAAGCCTGCTTCACCATTCTAATCTTGTTAAGTTAATTGGCTACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGATCCCTGGAAGACCATCTTTTTGATCTTAATCAAGACAAAGAACCCCTAAGTTGGAGTGCCCGAATGAAGATTGCTGTTGGAGCTGCTCGGGGCCTTGAGTATCTGCACTGTAAGGCAGATCCCCCCGTTATTTATCGTGACTTGAAATCTGCAAACATCTTGTTAGACAATGAATTCAACCCAAAACTGTCAGATTTTGGGCTTGCAAAACTTGGACCTGTGGGAGACAATACCCATGTTTCAACGAGAGTGATGGGTACATATGGCTACTGTGCACCAGAGTATGCAATGAGTGGAAAATTAACTCTTAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGACGTAGGGCAATAGACTCTAGTAGAAGACCAGGAGAGCAAAACTTAGTTTCTTGGTCTCGTCCATTTTTTAGTGACCGGAGAAAGTTTGTACATATGGTTGATCCTCTTTTGCAAGGAAACTTCCCCTTGCGCTGTTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCGAAATTCCGTCCACTTATCAGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGACTCAGAGTATCCCTGAAGTCCATAGACATGGTTCAGAAATAGACAGAAATTAA 1224 0.4224 MSCFSCLFSRRKDVSRVEVDNGTRSATSSGNGGVNAAATDKEGERKKESSEGKGKSGSSSKSSTAAASFGFRELAAATRGFKEVNLIGEGGFGRVYKGRLSTGEASYRVFGHLNIFTCLIIIMNYCLKKKNYLQVVAIKQLNHDGHQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLNQDKEPLSWSARMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDSSRRPGEQNLVSWSRPFFSDRRKFVHMVDPLLQGNFPLRCLHQAIAITAMCLQEQPKFRPLISDIVVALEYLASQTQSIPEVHRHGSEIDRN. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00317 407 Gene3D Transferase(Phosphotransferase) domain 1 188 403 - -
Seca3g00317 407 Gene3D Phosphorylase Kinase; domain 1 40 109 - -
Seca3g00317 407 Gene3D Phosphorylase Kinase; domain 1 123 187 - -
Seca3g00317 407 MobiDBLite consensus disorder prediction 39 54 - -
Seca3g00317 407 SMART serkin_6 81 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00317 407 MobiDBLite consensus disorder prediction 20 35 - -
Seca3g00317 407 ProSiteProfiles Protein kinase domain profile. 81 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00317 407 Pfam Protein tyrosine and serine/threonine kinase 85 383 IPR001245 GO:0004672|GO:0006468
Seca3g00317 407 PANTHER OS07G0668900 PROTEIN 26 394 - -
Seca3g00317 407 FunFam Serine/threonine-protein kinase PBS1 187 402 - -
Seca3g00317 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Seca3g00317 407 SUPERFAMILY Protein kinase-like (PK-like) 69 392 IPR011009 -
Seca3g00317 407 MobiDBLite consensus disorder prediction 16 63 - -
Seca3g00317 407 CDD STKc_IRAK 87 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00317 Seca-Chr3 5314356 5317669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00317 1 389 Glycoside Hydrolase AT3G07070 55.584 3.35e-149 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca3g00317 PK_Tyr_Ser-Thr 3.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00317 - - gmx:100796595 573.163