Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00310 ATGGAAGCAGAGCATGCTATCTCAAATGGTATTGGAAGCTTGTACGTCAAAGTGATGACTGATGAACAAATGGAACTGCTGAGGCAACAGATATCTGTCTACGCCACCATTTGTGAGCGCCTTGTTGAGATGCACAAGGCCATCACTACTCAACAGGACCTCGCCGGACTGAGGTTGGGTAATTTGTACTGTGATCCACTGATGGCATGCTCTGGACACAAGATAACTGCGAGGCAACGGTGGACTCCAACGCCTCTGCAGCTTCAAATACTGGAGCGTATTTTTGATGAAGGCAATGGCACTCCAAGCAAACAGAAGATCAAAGATATAACCATAGAATTGGGGCAACATGGTCAAATATCAGAGACAAATGTTTATAATTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGGAAGCAACTCGCTCCTGCACCAAGTCAAGTTGAACCAGAGGCAGAGCCAGAGACAGAAGTTGAGTCTCCAAAAGAGAAAAAGAATCGTGCAGAAAATGTTCAAGTTCAACCCTATGAGGATATTTCATCACCTCATAGGGATAGGGATATGTACATCCAGAGTCCTGACATAGGATTTGAGCAATTGTTGGGTAAAATAGAAGCTGCAGGCTGGTGGACTCAACATTGTTGA 645 0.4496 MEAEHAISNGIGSLYVKVMTDEQMELLRQQISVYATICERLVEMHKAITTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQLAPAPSQVEPEAEPETEVESPKEKKNRAENVQVQPYEDISSPHRDRDMYIQSPDIGFEQLLGKIEAAGWWTQHC. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00310 214 CDD homeodomain 78 140 IPR001356 GO:0003677
Seca3g00310 214 SUPERFAMILY Homeodomain-like 77 140 IPR009057 -
Seca3g00310 214 Pfam Homeodomain 78 138 IPR001356 GO:0003677
Seca3g00310 214 SMART HOX_1 76 143 IPR001356 GO:0003677
Seca3g00310 214 MobiDBLite consensus disorder prediction 137 188 - -
Seca3g00310 214 ProSiteProfiles 'Homeobox' domain profile. 74 139 IPR001356 GO:0003677
Seca3g00310 214 Gene3D - 79 142 - -
Seca3g00310 214 MobiDBLite consensus disorder prediction 155 171 - -
Seca3g00310 214 PANTHER WUSCHEL-RELATED HOMEOBOX 13 10 198 IPR044559 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00310 Seca-Chr3 5185458 5187900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00310 14 165 Wox Gene Family AT4G35550 71.895 8.15e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca3g00310 Homeodomain 9.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00310 - - gmx:100820530 354.369