Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00306 ATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCTGATGATAGCTTTCATTTTGAGAGGTTGCACATCGAGCCTATTTATGATGCTTTTGTATGTCCTTTGACGAAGCAAGTTATGCGCGATCCTGTTACTTTAGAAAATGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGACGGAAACTGGTTTGCCCTTTGACTCTGCAAGAATTAAGAAGCACTGAACTGAATCCAAGTATGGCTTTGCGCAACACCATTGAAGAGTGGACTACCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGTTCTTTGAATATGGGGAGTCCAGAAAATGAAACTCTTCAGGCCTTAAAGTATGTCCAGCACATCTGTCGAAGAAGTCGGTCAAATAAGCACAATATCCGCAATGCAGGGCTTATACCAATGATCGTTGACATGCTGAAGAGTAGCAGCCGTAAGATTCGCTGTAGAGCTTTGGAAACCCTTAGAATTGTGGTTGAGGAAGATGATGAGAATAAGCTTCTCTTTGTTCCAAAGGAATTGTTGGCCGAAGGGGACACTGTGCGTACGGTCGTAAAATTCCTTTCACACGAGCTTTCTAAAGAAAGAGAGGAAGCTGTCTCCTTGCTTTATGAGCTCTCAAAATCTGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGAGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATCTTTCCACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTACTGACCCAGCTCCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTGGAATCCTTGGTGAGCTGGTTTTGAACAATGATGTTAAAGTCATTGTTGCTAGAACTGCAGGTCCGTCTCTGATCAATATAATGAAAAGTGGTAATTTGCAGTCAAGAGAAGCTGCGCTGAAGGCACTAAATCAGATATCATCATGTGATCCAAGCGCAAAGGTTTTAATAGAGGCTGGCATACTTTCCCCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCTGCTTCCCACACGATTAAAAGAGGTCTCTGCTACAATTCTTGCCAGTGTTGTTAACTCAGGAGAAGACTTTGATTCCATTCCAGTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCAGCAATCGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTAGTTCTCCAACTACAGTGCTGAGTGTTGTTTCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTCCAATTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCTTAAGACTTCTTCAGAATTTGTCTCCGCACATGGGTCAGGAACTAGCTGATGCACTGCGTGGCTCAGTTGGACAGCTTGGTAGTCTAGTTAAAGTGATATCAGAAAATACAGGAATCACTGAAGAGCAGGCAGCGGCTGTTGGCCTTTTAGCTGATCTACCTGAAAGGGATTTGGGCCTCACAAGGCAGCTACTGGATGAAGGTGCCTTTCTGACAGTCATATCTAGGGTGATTGCCATCAGGCAGGGAGAGATCAGAGGCGCTCGCTTTGTGACACCGGTTCTTGAAGGGCTTGTGAAGATTGTTGCAAGGGTTACATATGTTTTGGCTGATGAGCCTGATGCCATTGCACTCTGCCGTGATCACAATCTTGCTGCACTGTTTATTGAACTGCTTCAGGCCAATGGACTCGATAATGTACAGATGGTTTCTGCTACAGCTTTGGAGAATCTATCGCAAGAATCAAGAAATTTAACCAAATTGCCCGAGTTGCCACCGCCAGGTTTTTGTGCTTCAATCTTTTCTTGCTTCAGCAAACAGCCAGTCATTACTGGATTGTGTAGGATCCACCGAGGGAGGTGTTCTTTGAAAGAAACATTTTGTCTTTATGAAGGGCAGGCAGTCGTTAAGTTAGTAGCTCTACTGGATCACACAAATGCGAGTGTGGTTGAGGCGGCACTTGCAGCCTTATCTACTATAATAGATGATGGAGTAGATATTGAACAAGGAGTATTGGTTTTGTGTGAAGCAGAGGGAGTGAAACCTATACTTGATGTGTTACTTGAGAAACGGACAGAAACTCTGAGGAGGAGAGCAGTTTGGGCAGTGGAGAGGCTATTGAGAACAGATGATATAGCCTATGAAGTTTCTGGAGATCAAAATGTGAGCACTGCACTTGTGGATGCTTTCCAGCATGGTGACTATCGAACTAGACAGATTGCTGAACGTGCTCTCAAGCATGTTGATAAGATACCCAACTTCTCAGGAATCTTTCCTAACATGGGATGA 2463 0.4421 MMAASWDGSNDPGSQSDDSFHFERLHIEPIYDAFVCPLTKQVMRDPVTLENGQTFEREAIEKWFKECKESGRKLVCPLTLQELRSTELNPSMALRNTIEEWTTRNEAAQLDMARRSLNMGSPENETLQALKYVQHICRRSRSNKHNIRNAGLIPMIVDMLKSSSRKIRCRALETLRIVVEEDDENKLLFVPKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDLSTVEKADKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLSMAGILGELVLNNDVKVIVARTAGPSLINIMKSGNLQSREAALKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEVSATILASVVNSGEDFDSIPVGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVLSVVSAIKSSGATISLVQFIEAPQKDLRVASLRLLQNLSPHMGQELADALRGSVGQLGSLVKVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFLTVISRVIAIRQGEIRGARFVTPVLEGLVKIVARVTYVLADEPDAIALCRDHNLAALFIELLQANGLDNVQMVSATALENLSQESRNLTKLPELPPPGFCASIFSCFSKQPVITGLCRIHRGRCSLKETFCLYEGQAVVKLVALLDHTNASVVEAALAALSTIIDDGVDIEQGVLVLCEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG. 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00306 820 SUPERFAMILY ARM repeat 464 808 IPR016024 -
Seca3g00306 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 116 IPR013083 -
Seca3g00306 820 SUPERFAMILY ARM repeat 121 451 IPR016024 -
Seca3g00306 820 Coils Coil 263 283 - -
Seca3g00306 820 Gene3D - 579 808 IPR011989 -
Seca3g00306 820 Gene3D - 117 321 IPR011989 -
Seca3g00306 820 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Seca3g00306 820 SUPERFAMILY RING/U-box 24 111 - -
Seca3g00306 820 SMART arm_5 314 353 IPR000225 GO:0005515
Seca3g00306 820 SMART arm_5 724 766 IPR000225 GO:0005515
Seca3g00306 820 SMART arm_5 597 638 IPR000225 GO:0005515
Seca3g00306 820 SMART arm_5 140 180 IPR000225 GO:0005515
Seca3g00306 820 SMART arm_5 679 720 IPR000225 GO:0005515
Seca3g00306 820 SMART arm_5 273 313 IPR000225 GO:0005515
Seca3g00306 820 SMART arm_5 354 399 IPR000225 GO:0005515
Seca3g00306 820 SMART arm_5 453 494 IPR000225 GO:0005515
Seca3g00306 820 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Seca3g00306 820 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 816 - -
Seca3g00306 820 Gene3D - 322 493 IPR011989 -
Seca3g00306 820 CDD RING-Ubox_PUB 31 88 IPR045210 -
Seca3g00306 820 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00306 Seca-Chr3 5161660 5166471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00306 3 820 U-box Gene Family AT1G76390 65.244 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00306 - - gmx:100789746 1445.25