Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00301 ATGTATGATTTTGGAGCGACTATGCCTGTGGGTATGGATTTTTATCCTCCATTTACAATGTTAGAAGAAGACAAAGACAATGCACTTGTGGTTGAAGATGAGAAATCAGGAGAATTGACTAATCTAAAACGAACAATGAAGGGTAAGCCTCCACGCCATGTCTCGGGTATGAGAGACAGCATTAGCACCACCAGATTGCTAACTGCTGGAGATTTGAGTTTGGATGTGGAGGTCACTGGGAGCAAGTCATCTTCTGAAGACAAGACAGAGTTTCTACCCATATATCGGTCAGGAAGTTGTGCTGAAAGAGGACCTAAACAATATATGGAAGACGAACATATATGCGTGGATAATCTTATTCAACATATGGATTCTGCTTCAAATATTCCTTTTCCTGGAGCTTTCTATGGGGTGTTTGATGGTCATGGAGGTACAGATGCAGCTTTGTTTATAAGAAATAACATCCTCAGCTTCATAGTTGAGGACTCCCATTTTCCAACATGCGTAGGGAAGGCAATTACAAGTGCATTTCTGAAAGCTGATTATGCATTTGCAGATTCTAGTTCGCTTGATATCTCCTCTGGCACCACTGCTTTAACTGCTCTTGTATTTGGAAGGACCATGATAATTGCTAATGCTGGGGATTGTCGAGCTGTACTGGGGAGGCGAGGTAGAGCAATTGAGATGTCAAAAGACCAGAAACCAAATTGCATTTCAGAAAGGCTAAGGATTGAGAAACTTGGTGGAGTGGTATATGATGGATACTTGAACGGCCAGTTATCAGTTTCCCGTGCTTTAGGAGACTGGCACATGAAGGGTCCCAAGGGTTCTCCCTGCCCTTTAAGTGCTGAACCAGAGTTGCAGGAAATCTGCTTGACTGAGGATGATGAGTTCTTGATTATGGGCTGTGACGGTCTGTGGGATGTAATGAGCAACCAATGTGCTGTGACCATGGCAAGGAAAGAATTGATGATACATAGTGATCCTCAAAGGTGTTCTAGAGAGCTGGTCAGAGAGGCTCTTAAGCGTAACTCATGTGATAATTTAACAGTTATCGTGATATGTTTCTCCCCAGATCCTCCTCCTAGGATAGAGACACCTCCTTCTCGAGTCAGGAGGAGTATATCAGCAGAAGGCCTCAATTTACTCAAGGGTGTATTGGACTGTTAG 1170 0.4333 MYDFGATMPVGMDFYPPFTMLEEDKDNALVVEDEKSGELTNLKRTMKGKPPRHVSGMRDSISTTRLLTAGDLSLDVEVTGSKSSSEDKTEFLPIYRSGSCAERGPKQYMEDEHICVDNLIQHMDSASNIPFPGAFYGVFDGHGGTDAALFIRNNILSFIVEDSHFPTCVGKAITSAFLKADYAFADSSSLDISSGTTALTALVFGRTMIIANAGDCRAVLGRRGRAIEMSKDQKPNCISERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSPCPLSAEPELQEICLTEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHSDPQRCSRELVREALKRNSCDNLTVIVICFSPDPPPRIETPPSRVRRSISAEGLNLLKGVLDC. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00301 389 Pfam Protein phosphatase 2C 96 348 IPR001932 -
Seca3g00301 389 SUPERFAMILY PP2C-like 91 357 IPR036457 -
Seca3g00301 389 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
Seca3g00301 389 Gene3D - 74 359 IPR036457 -
Seca3g00301 389 SMART PP2C_4 86 354 IPR001932 -
Seca3g00301 389 PANTHER PROTEIN PHOSPHATASE 2C 84 354 IPR015655 GO:0004722|GO:0006470
Seca3g00301 389 CDD PP2Cc 95 356 IPR001932 -
Seca3g00301 389 FunFam Probable protein phosphatase 2C 22 81 359 - -
Seca3g00301 389 ProSiteProfiles PPM-type phosphatase domain profile. 96 356 IPR001932 -
Seca3g00301 389 SMART PP2C_SIG_2 111 356 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00301 Seca-Chr3 5115732 5118077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00301 10 388 PP2C-type Phosphatase Gene Family AT2G33700 71.802 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00301 K14803 - gmx:100778015 699.123