Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00300 ATGATAATTGGTTTGTGGATATGGTATTATGTGCAATTAATGCTTAAAAATTTGTTGGTTAGTTTAGTTGAGATGAATTTGTTTTGTGCTGTTTGGTGGATGATGGTGGTGCTCCCTTTCCCCTATTTGGGAGGGTTTGTGGCGGCTGCAACTTCAACTTCAAATGTGTCATCCTCAAGACCCTCTGTTGTGAATATCGGAGCTATCTTTACCTTTGATTCCGTGATTGGGAAAGTTGCTAAAATAGCCATGGAGGAAGCTGTGAAGGACATAAACGCCAATACCAACATTCTACATGGAACTAAACTCGTTCTTCATATGCAAACTTCCAATTGCAGTGGTTTTGATGGCATGGTTCAAGCTTTGAGGTTCATGGAGACTGATGTAGTTGCTATATTAGGTCCACAATCTTCTGTGGTTGCCCACATAATATCCCATGTTGCAAATGAGCTAAGGGTTCCTTTATTGTCATTTGCTGCAACAGACCCTACACTTTCATCACTTCAGTTCCCTTTTTTTGTGAGGACCACACTGAGTGATTTGTACCAAATGGCTGCTGTTGCTGAAATCATTGACCATTATGGTTGGAAGGAAGTGATTGCTTTATATGTAGATGATGATTATGGAAGAAATGGTGTGTCTGCATTAGATGATGCATTGGCAGCTAGGCGCTGTAGAATCTCCTATAAGGCTGGGATTAAATCAGGAGCTGAAGTTGACAAGGGTGAAATCACCAATTTGCTTGTGCAGGTGGCATTGATGCAATCTAGGGTCATTGTTCTCCATGTACATTCTAATTCTGGTTTTATGATCTTCAATGTGGCACGTTATCTTGGGATGATACAAGAAGGCTATGTCTGGATAGCCACAGATTGGCTCTCAACTGTTCTAGATTCTTCTTCTCTCCCTTCAGAGACAATGGATGTTCTTCAAGGAGTGCTTGTTCTGCGCCAGCATACACCTGATTCAGATAAAAAAAGAGCATTTTTCTCTAGGTGGAACAAGTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTTCATGCTTATGATACTGTTTGGCTGGTTGCACAGGCTGTTGATGCATTTTTCAGCCAGGGTGGGGTTGTTTCATGTACCAATTACACTAGTTTACATGATGATAAGGGAAGTGGTCTTAATCTTGATGCAATGAGCATTTTTGACAATGGAACTCTTCTGTTGAACAACATATTGAAGAGTAATTTTGTTGGATTGACAGGTCCAGTGAAATTTCAACCAGACAAATCTCTTGTTCGTCCTGCATATGACATCATTAATGTGGTTGGAACTGGCATGCGTAGGATTGGTTATTGGTCCAACTATTCTGGTCTTTCAATTGTGCCTCCTGAGATATTGTATGCTAAGCCACCTAATAGATCAAGTGCAAACCAGCAACTTAGCAGTGTGATATGGCCTGGAGAAACATTATCCAAGCCCCGTGGATGGGTATTCCCAAATAATGGAAAACAATTGAGAATTGGTGTGCCTATCAGAGTTAGTTTCCGTGAATTTGTGTCTCCAGTGCAGGGAACAGATATGTTTAAAGGTTTTTGTGTTGATGTATTCATTGCAGCTGTAAACTTGTTACCATATGCTGTTCCATACCGTTTTGTGCCATTTGGAGATGGTCATCAAAATCCAAGCTACACAGAACTTGTCAGGTTAATCACCACTGGTTACTTTGATGGTGCCATTGGTGACATTGCCATTGTCACAAACCGGACTAGAGTGGTAGATTTTACACAGCCATATGCTGCATCTGGACTTGTTGTGGTGGCACCTTTTAAGAAGATCAATTCTGGTGGTTGGTCTTTCCTGCAGCCATTCACTCCTCTTATGTGGACTGTCACTGCTTGTTTCTTCTTTTTCATTGGGATAGTTGTATGGACTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCTAAACAACAAATTATAACCATTTTCTGGTTTAGCCTGTCAACTCTATTTTTTTCCCACAGAGAGAACACAATGAGTACTCTTGGTCGTGTTGTGATACTCATATGGTTGTTTGTGGTTTTGATCATCAATTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTTCAGCAGTTATCTTCTCCTATCAATGGAATAGATAGCCTAAAAGCTAGTAATGAACCTATAGGTTTCCAAGTGGGTTCATTTGCAGAACGGTACTTGAGTGAAGATCTTGGAATATCCAAATCTAGACTTGTTCCCCTTGGATCTCCAGAAGCATATGCTAAGGCACTCCAGCTTGGTCCTAATAATGGAGGTGTTGCTGCTATTGTTGATGAACGATCTTATGTAGAAATCTTCTTATCAACACAGTGCACATTCAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCTCGGGACTCACCTTTGGCTGTGGATTTGTCCACTGCCATTCTACAACTTTCTGAAACTGGTGATCTGCAGCGGATTCATGATAAGTGGATGACACGAAGCAGCTGTAGTTTAGATAATGCTGAAATTGACTCAGATCGTCTTCAGCTTAAGAGCTTCTGGGGTCTCTTTCTCATTTGTGGGATGGCTTGCTTTATTGCTCTTCTCATATATTTTTTACAGATTATGTGTCAGTTATGGCATTCTGCTCCTTCTGAATCTGCTTCAAATGTTAGCCCGATTCAAAGATTTCTTTCACTCATTGATGAGAAGGAAGATCCATCAAGGAGTGGAAGAAGAAAGAGGAATGGAGAAGAAAGATCACTTGAAGATCAAATGGGAAGGCAGCCAAAGAGGATACAAACAGAAACAACAGCTGAATTCAAATCAAACAATTAA 2862 0.4102 MIIGLWIWYYVQLMLKNLLVSLVEMNLFCAVWWMMVVLPFPYLGGFVAAATSTSNVSSSRPSVVNIGAIFTFDSVIGKVAKIAMEEAVKDINANTNILHGTKLVLHMQTSNCSGFDGMVQALRFMETDVVAILGPQSSVVAHIISHVANELRVPLLSFAATDPTLSSLQFPFFVRTTLSDLYQMAAVAEIIDHYGWKEVIALYVDDDYGRNGVSALDDALAARRCRISYKAGIKSGAEVDKGEITNLLVQVALMQSRVIVLHVHSNSGFMIFNVARYLGMIQEGYVWIATDWLSTVLDSSSLPSETMDVLQGVLVLRQHTPDSDKKRAFFSRWNKLTGGSLGLHSYGLHAYDTVWLVAQAVDAFFSQGGVVSCTNYTSLHDDKGSGLNLDAMSIFDNGTLLLNNILKSNFVGLTGPVKFQPDKSLVRPAYDIINVVGTGMRRIGYWSNYSGLSIVPPEILYAKPPNRSSANQQLSSVIWPGETLSKPRGWVFPNNGKQLRIGVPIRVSFREFVSPVQGTDMFKGFCVDVFIAAVNLLPYAVPYRFVPFGDGHQNPSYTELVRLITTGYFDGAIGDIAIVTNRTRVVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPLMWTVTACFFFFIGIVVWTLEHRINDEFRGPPKQQIITIFWFSLSTLFFSHRENTMSTLGRVVILIWLFVVLIINSSYTASLTSILTVQQLSSPINGIDSLKASNEPIGFQVGSFAERYLSEDLGISKSRLVPLGSPEAYAKALQLGPNNGGVAAIVDERSYVEIFLSTQCTFRIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSETGDLQRIHDKWMTRSSCSLDNAEIDSDRLQLKSFWGLFLICGMACFIALLIYFLQIMCQLWHSAPSESASNVSPIQRFLSLIDEKEDPSRSGRRKRNGEERSLEDQMGRQPKRIQTETTAEFKSNN. 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00300 953 CDD GluR_Plant 497 838 - -
Seca3g00300 953 Gene3D - 609 737 - -
Seca3g00300 953 Pfam Bacterial extracellular solute-binding proteins, family 3 522 840 IPR001638 -
Seca3g00300 953 SMART GluR_14 500 841 IPR001320 GO:0015276|GO:0016020
Seca3g00300 953 FunFam Glutamate receptor 494 609 - -
Seca3g00300 953 SUPERFAMILY Periplasmic binding protein-like I 58 491 IPR028082 -
Seca3g00300 953 SUPERFAMILY Periplasmic binding protein-like II 476 841 - -
Seca3g00300 953 Pfam Ligand-gated ion channel 841 872 IPR001320 GO:0015276|GO:0016020
Seca3g00300 953 CDD PBP1_GABAb_receptor_plant 65 456 IPR044440 -
Seca3g00300 953 FunFam Glutamate receptor 179 331 - -
Seca3g00300 953 FunFam Glutamate receptor 610 740 - -
Seca3g00300 953 PIRSF IGluLR_plant 30 953 IPR017103 -
Seca3g00300 953 Gene3D - 82 427 - -
Seca3g00300 953 Gene3D - 494 608 - -
Seca3g00300 953 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 64 897 IPR015683 -
Seca3g00300 953 Gene3D - 787 846 - -
Seca3g00300 953 MobiDBLite consensus disorder prediction 910 938 - -
Seca3g00300 953 PRINTS Metabotropic glutamate GPCR signature 164 183 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca3g00300 953 PRINTS Metabotropic glutamate GPCR signature 199 216 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca3g00300 953 PRINTS Metabotropic glutamate GPCR signature 183 199 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca3g00300 953 PRINTS Metabotropic glutamate GPCR signature 132 158 IPR000337 GO:0004930|GO:0007186|GO:0016020
Seca3g00300 953 MobiDBLite consensus disorder prediction 910 953 - -
Seca3g00300 953 FunFam Glutamate receptor 736 843 - -
Seca3g00300 953 MobiDBLite consensus disorder prediction 939 953 - -
Seca3g00300 953 Gene3D - 179 452 - -
Seca3g00300 953 Pfam Receptor family ligand binding region 82 437 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00300 Seca-Chr3 5093650 5098581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00300 58 940 Ion Channels AT1G42540 65.628 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00300 K05387 - gmx:102661260 1531.92