Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00274 ATGGAGGGTGGTGAGAAACCTGGGGATTGTAACTCCCATGGCAATGCCGATATGGATATTGTTGATGCCAATTTGCAACACCAACATCCAGAAAAGAATCAAAATGCGGGTTCCCCTGCTCAGTTACAACAGGATCAAGTAATGGTTGATCAGGGTGATGATAACAAAAATGGCGATTCTACTCCTAATCAAATGCTAGAAACCAAAGTAATTAGTGAGAATCAGCTTGAACGTGAAGATGCTAAAACCCTTTCGCATCAGGAATTGATCACTCCAAAGCCTAAAGAAAAGAGTGTCAGAGAAATGAAGAACGTGCTAAACGATACTGAGATGACTGATTATGATGAGTCTGGCACGAGTCTGGAGCGAGAAACATTTATGAAAGAGATCGAGAATTTCTACAAAGAGAGGTCCTTGGAATTTAAGGCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGTTATGGAGAGCTGTTATCAGACTAGGTGGCTATGATGTGGTAACTGCATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCTAAGACTTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAACCATCAAGTGTGGAAAAAGAGACCATTGTTTATCAGCCTCCAGGCTCAGGTAGGGCACGAAGGGATGCGGCGGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTCAAAAGCATTGGCATGATTAATAAGCAGAGGACACCATCTGGACTGGATCAAGACAAAGCTGCAAATATTGAAGGAGATAGACAGTTAAGTTTCTGGTCTTTTCTATTAATTGACCCATAG 981 0.4332 MEGGEKPGDCNSHGNADMDIVDANLQHQHPEKNQNAGSPAQLQQDQVMVDQGDDNKNGDSTPNQMLETKVISENQLEREDAKTLSHQELITPKPKEKSVREMKNVLNDTEMTDYDESGTSLERETFMKEIENFYKERSLEFKAPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSFHQPSSVEKETIVYQPPGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTPKREKNLKSIGMINKQRTPSGLDQDKAANIEGDRQLSFWSFLLIDP. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00274 326 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 26 309 IPR045147 GO:0006357
Seca3g00274 326 SUPERFAMILY ARID-like 109 218 IPR036431 GO:0003677
Seca3g00274 326 SMART bright_3 121 212 IPR001606 GO:0003677
Seca3g00274 326 MobiDBLite consensus disorder prediction 27 66 - -
Seca3g00274 326 MobiDBLite consensus disorder prediction 1 66 - -
Seca3g00274 326 ProSiteProfiles ARID domain profile. 120 211 IPR001606 GO:0003677
Seca3g00274 326 SMART ARID_2 117 207 - -
Seca3g00274 326 CDD ARID 122 207 - -
Seca3g00274 326 FunFam AT-rich interactive domain-containing protein 3 120 219 - -
Seca3g00274 326 Pfam ARID/BRIGHT DNA binding domain 122 207 IPR001606 GO:0003677
Seca3g00274 326 MobiDBLite consensus disorder prediction 78 97 - -
Seca3g00274 326 Gene3D - 121 218 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00274 Seca-Chr3 4241482 4247210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00274 7 303 ARID Transcription Factor Family AT1G76510 54.515 1.56e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca3g00274 ARID 7.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00274 - - gmx:100777965 482.256