Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00273 ATGGCTTCTCACAATAACAATGACGGAACCCAAAACCAAAACCAAAGTCAATTAGGTCGGTTTGTACCACACCTGTTTATGACACCAGACCTACACCTTCAAACACCTGATACCCTAACCGCTCAACCAACTCAAGACGACTCCGACGGAGATGATGCTGGTGGAACCGGAGGAGCAGGAGCATCCTCCACAGGGCGGCGCCCTAGAGGCCGTCCTCCTGGTTCCAAGAACAAACCCAAGGCACCTATCATAGTAACAAGGGACAGCCCCAACGCGCTTCGCTCGCACGTGCTGGAGGTCACCGCTGGAACTGACGTGGTGGAGAGCCTCTCCGATTACGCCCGTCGCCGAGGGAGAGGCGTCTGTGTGCTTAGCGGCAACGGAACGGTCTCGCACGTGACGCTTCGTCAGCCTGCGGGTGGGAGCGTTGTAACTCTTCATGGACGGTTCGAGATTCTTTCCATCTCCGGGACGGTTCTCCCGCCGCCGGCTCCGCCTGGTGCGGATGGATTGACGGTTTATTTGTCTGGCGGACAGGGACAGGTGGTTGGGGGAAGCGTGGTGGCGCCTTTGATGGCTTCAGGTCCTGTGGTGTTGATGGCTGCTTCGTTTGCTAACGCTGTGTTTGAAAGGTTACCTTTGGCTTTGGAGGAACAACCCGCAACAACATCACAGTCTTCTGGTGTCACTGGACAAATGGTAGAAGGTGGGGGCGGTGGCAGTGGAAGTGGAAGTGTTGCCTCTTTCATGAATACAGCGGCGGTGGCGGCAGGAAGGAACATGAGCAGGATCAACTATCCCTTTTCCTCCTCCTCATCAGTGCCAGGTGATCTATTTGGATGGGGTGCAACTGCAGGAGGACAAGCACCAAAACCTCCTCCTTTTTAG 888 0.5563 MASHNNNDGTQNQNQSQLGRFVPHLFMTPDLHLQTPDTLTAQPTQDDSDGDDAGGTGGAGASSTGRRPRGRPPGSKNKPKAPIIVTRDSPNALRSHVLEVTAGTDVVESLSDYARRRGRGVCVLSGNGTVSHVTLRQPAGGSVVTLHGRFEILSISGTVLPPPAPPGADGLTVYLSGGQGQVVGGSVVAPLMASGPVVLMAASFANAVFERLPLALEEQPATTSQSSGVTGQMVEGGGGGSGSGSVASFMNTAAVAAGRNMSRINYPFSSSSSVPGDLFGWGATAGGQAPKPPPF. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00273 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 205 IPR005175 -
Seca3g00273 295 MobiDBLite consensus disorder prediction 35 83 - -
Seca3g00273 295 ProSiteProfiles PPC domain profile profile. 90 228 IPR005175 -
Seca3g00273 295 MobiDBLite consensus disorder prediction 35 49 - -
Seca3g00273 295 PIRSF ESCAROLA 3 295 IPR014476 GO:0003680
Seca3g00273 295 CDD DUF296 94 160 IPR005175 -
Seca3g00273 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 241 IPR014476 GO:0003680
Seca3g00273 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 214 - -
Seca3g00273 295 MobiDBLite consensus disorder prediction 220 242 - -
Seca3g00273 295 FunFam AT-hook motif nuclear-localized protein 93 220 - -
Seca3g00273 295 Gene3D - 93 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00273 Seca-Chr3 4230584 4232437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00273 44 214 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 67.956 2.51e-72 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00273 - - qsu:112029958 278.485