Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00269 ATGGCGTATCAAGCGATTCAGGGCCCGAGTTCGGGATCGAGTTCGAGTTCGGGTTTTCAACTATTGACCTCTCCTTTCGGCGACACCACGTACACCAAGGTCTTCGTTGGAGGATTGGCTTGGGAGACTCAGAGCGAAACCATGCGCCGTTACTTTGAGCAATTTGGTGAGATTCTCGAGGCCGTCGTGATCACTGATAAGAACACGGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCTAGAAGAGCCTGTGCTGATCCGACTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGTCGACCACGACCCCCTATGTCCTATGGTATTGCATCTTATCCCACAGGACGGGTAAGACCAGCCTCCCCTTTTGTTGGAAGTTTGCAACCAGCCCGTGGTGCTTATGTTGGAGGTTTTGGCTACCAGCAACCACTCTCCTATGGCTATCAACAAGGATTGGTTTATCCTCCTTATGGGTATACGACATATGGACCTGAATACATCTATCCACAGGTTGAAAGTCTGTACAACCCATATATGGGTCAACAGTACCTTCAAATATATGGAGTGCCTGGGGCAGTGAATACAACTATTTATCCGTATGGACAATTAGGTCAATCTATTCCTAGTGGTCATGGTTATACAGCAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGATCCAATGTCAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCACCATATCCTAGCGGAATTGCTGCACCAGTTCCAGGCCAACCACAATTTCTTGTTCCTGCTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGCTGGGTGA 882 0.4853 MAYQAIQGPSSGSSSSSGFQLLTSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPMSYGIASYPTGRVRPASPFVGSLQPARGAYVGGFGYQQPLSYGYQQGLVYPPYGYTTYGPEYIYPQVESLYNPYMGQQYLQIYGVPGAVNTTIYPYGQLGQSIPSGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQAPYPSGIAAPVPGQPQFLVPASPQFMQGSGPDQTAG. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00269 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Seca3g00269 293 Gene3D - 4 121 IPR012677 -
Seca3g00269 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Seca3g00269 293 SMART rrm1_1 33 105 IPR000504 GO:0003723
Seca3g00269 293 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Seca3g00269 293 PANTHER BOULE-RELATED 10 253 - -
Seca3g00269 293 CDD RRM_RBM24_RBM38_like 32 107 - -
Seca3g00269 293 SUPERFAMILY RNA-binding domain, RBD 31 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00269 Seca-Chr3 4142636 4147887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00269 21 195 C2H2 Transcription Factor Family AT2G19380 30.726 2.64e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00269 - - gmx:100779244 523.472