Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00265 ATGTCAGGATCCGATAGCAGGGACCAGTTCACCATGGGCTTCAACAAACCCCAGCCCCAGCCCCAGCAACAGCAACAGCTGCAACCGCACCTGCAGAACATGCGTTTAGACTACGCTGCTGACGGCGCTGGCGTTTTCAAGCCAGCGCCTATGTACAACCATTCAGCACCTGTAACCGCTCACATCAACGGCGGAGATTCCGCTGTGGGAGCTGTGCATCAGGGCCTGGGCCTGGGCCAGGGCAACATGGGTGTCTCTTCTGCTGAAACACCACTGAAAAGGAAGAGGGGGAGGCCCAGGAAATATGGGCCTGATGGAAGCATGGCGTTGTCGTTGACGACGACCACTCCTCCTGCTGCTCCTCCTCCAGCTGCTCCTGCTCCTGCTGGGGTGCCTGTATGCCAGCCCGGTGGGCCTGGGCATTTGACTCCGGCGACTCCATCGGCTCCTGGGTCAACTGGTACTGTGAAGAAGGGAAGAGGCAGGCCTCGCGGCTCTGTCAATAAGAATTCATCAAAGTCTTCTGGAAAATCAAGAAATGGATTTGTAGCAATTGTTATTACTGCGAACGCTGGAGAGGATTTGTCATCAAAGATTATGGCAGTTTCTAGGAATGGTGGAAGACATGTCTGCATCTTAGCAGCAAATGGAACCATATCTAATGTGACACTTCGCCAACCCGACTCATCTGGTGGAACTGTGACTTATGAGGGGAGATTTGAGATCCTATCACTTGGTGGTTCTTTGCTTCTTTCTGAAAATAGTGGTTCGGACAGCAGATGTGGTGGATTAAGTGTGTCCTTGTCAGGACCAGATGGCCGTGTTTTGGGTGGTCCAGTTGCAGGTCTTTTGGTAGCTGCTGCCCCTGTTCAGATAGTTTTGGGGAGCTTTGGTTCAGCGGGTCGCAAGGGATCCAAATATGCAAAGCGGATGGAAAATCTATCTGCCCCACCTACAGGTTCCACAGCTGGCCAAAGCAGCTCCCCATCACGGGGTACTTTCAGTGAATCGTCTGGTGGACCTGGGAGCCCGCTTAACCAAAGTACAGGAGCCTGCGATAACAACAACACACCACAAGGCATTCCAGGCATGCCCTGGAAGTAA 1104 0.5317 MSGSDSRDQFTMGFNKPQPQPQQQQQLQPHLQNMRLDYAADGAGVFKPAPMYNHSAPVTAHINGGDSAVGAVHQGLGLGQGNMGVSSAETPLKRKRGRPRKYGPDGSMALSLTTTTPPAAPPPAAPAPAGVPVCQPGGPGHLTPATPSAPGSTGTVKKGRGRPRGSVNKNSSKSSGKSRNGFVAIVITANAGEDLSSKIMAVSRNGGRHVCILAANGTISNVTLRQPDSSGGTVTYEGRFEILSLGGSLLLSENSGSDSRCGGLSVSLSGPDGRVLGGPVAGLLVAAAPVQIVLGSFGSAGRKGSKYAKRMENLSAPPTGSTAGQSSSPSRGTFSESSGGPGSPLNQSTGACDNNNTPQGIPGMPWK. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00265 367 MobiDBLite consensus disorder prediction 315 361 - -
Seca3g00265 367 SUPERFAMILY AF0104/ALDC/Ptd012-like 184 300 - -
Seca3g00265 367 MobiDBLite consensus disorder prediction 1 32 - -
Seca3g00265 367 Gene3D - 184 314 - -
Seca3g00265 367 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 43 353 IPR039605 GO:0003680
Seca3g00265 367 ProSiteProfiles PPC domain profile profile. 178 318 IPR005175 -
Seca3g00265 367 MobiDBLite consensus disorder prediction 80 178 - -
Seca3g00265 367 MobiDBLite consensus disorder prediction 1 33 - -
Seca3g00265 367 MobiDBLite consensus disorder prediction 312 367 - -
Seca3g00265 367 Pfam Plants and Prokaryotes Conserved (PCC) domain 185 297 IPR005175 -
Seca3g00265 367 MobiDBLite consensus disorder prediction 116 133 - -
Seca3g00265 367 CDD DUF296 185 297 IPR005175 -
Seca3g00265 367 SMART AT_hook_2 93 105 IPR017956 GO:0003677
Seca3g00265 367 SMART AT_hook_2 157 169 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00265 Seca-Chr3 4080156 4084801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00265 33 367 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 47.110 5.68e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00265 - - csav:115711780 311.997