Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00263 ATGGTGTTAGCAATAGCAATGGAAGAGGTACTGTGTGAACTTAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCACCGGGCTTTAGGTTTCATCCAACTGATGAAGAACTCATAACCTTTTATTTGGCTTCAAAGGTGTTTAATGCCACCTTCACTACCAATGTCAACTTTGCCGAAGTTGACCTCAATAGGTGTGAGCCTTGGGAACTTCCAGATGTGGCAAAGATGGGGGAAAGAGAGTGGTACCTGTTCAGCTTGAGGGACAGAAAATACCCAACAGGACTAAGAACTAACAGAGCAACTGGAGCTGGCTACTGGAAGGCCACTGGGAAGGACAAGGAAGTTTACAGTGCCTCAAATGGTGCCCTACTTGGGAAGTAG 384 0.4609 MVLAIAMEEVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNATFTTNVNFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASNGALLGK. 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00263 127 Gene3D NAC domain 34 127 IPR036093 GO:0003677|GO:0006355
Seca3g00263 127 ProSiteProfiles NAC domain profile. 25 127 IPR003441 GO:0003677|GO:0006355
Seca3g00263 127 SUPERFAMILY NAC domain 20 126 IPR036093 GO:0003677|GO:0006355
Seca3g00263 127 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 119 - -
Seca3g00263 127 Pfam No apical meristem (NAM) protein 26 117 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00263 Seca-Chr3 4063405 4064507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00263 3 126 NAC Transcription Factor Family AT1G76420 72.581 3.13e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g00263 NAM 5.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00263 - - gmx:100808967 238.81