Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g00258 | ATGACTCGTCCTTTCAGATATTTAGGCGAGCGTAACTCGTCCCCTGACTCACCTGATTCCGCCGTCGTTGATTCCGACTTCGTCGTCATCCTCGCCGCTCTCCTCTGCGCTCTCATCTGCGTTCTCGGCCTCGTCGCCGTCGCCCGCTGCGGCTGTCTCCGCCGCCTACGTCTCTCCTCATCCTCCGCCGTGCCTCCTCCTCCTCCTGCTCCTCCGGCCGCCGCCAACAAAGGCGTCAAGAAGAAGGTCCTGCGCTCTCTCCCGAAGCTCACCGCCACCGCCGAATCCGCAGTGAAATTCTCCGATTGCGCGATCTGCCTGTCCGAGTTCTCCGCCGGTGACGAAATCCGAGTGCTACCTCAGTGCGGCCATGGCTTCCATGTGTCCTGCATCGACGCGTGGCTCAAATCGCATTCTTCGTGTCCTTCCTGCCGTCAAATTCTGGTGGTTTCTAGATGCGACAAGTGTGGCGGGATCCCTGCCCCTGCCCCTGCCACTGCCAGCTCCAGCACCGCACCGCCGCCGGATTCTGAAGCCAGATTCAAGGTAAGGGAGAACGACGCCAATAGGTTCTTGCCTTAG | 582 | 0.6082 | MTRPFRYLGERNSSPDSPDSAVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRLSSSSAVPPPPPAPPAAANKGVKKKVLRSLPKLTATAESAVKFSDCAICLSEFSAGDEIRVLPQCGHGFHVSCIDAWLKSHSSCPSCRQILVVSRCDKCGGIPAPAPATASSSTAPPPDSEARFKVRENDANRFLP. | 194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g00258 | 193 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 149 | IPR013083 | - | |
| Seca3g00258 | 193 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
| Seca3g00258 | 193 | CDD | RING-H2_EL5-like | 102 | 145 | - | - | |
| Seca3g00258 | 193 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Seca3g00258 | 193 | SMART | ring_2 | 103 | 144 | IPR001841 | - | |
| Seca3g00258 | 193 | MobiDBLite | consensus disorder prediction | 178 | 193 | - | - | |
| Seca3g00258 | 193 | MobiDBLite | consensus disorder prediction | 162 | 193 | - | - | |
| Seca3g00258 | 193 | SUPERFAMILY | RING/U-box | 86 | 151 | - | - | |
| Seca3g00258 | 193 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 17 | 157 | - | - | |
| Seca3g00258 | 193 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g00258 | Seca-Chr3 | 3945653 | 3946234 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g00258 | 5 | 193 | C3H Transcription Factor Family | AT1G20823 | 61.421 | 8.55e-68 | 204 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g00258 | - | - | gmx:100794614 | 264.233 |