LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g00247	ATGGCTTCAAATTCCGATTCGGATTCCTCAACACCACCTCCTCCATCCGATTCATCTTCATCAGAATCCCCGCCACCACCCGATTCATCGCCGCCTCCACCACCCAACGATAATTCATCTCCTCCACCACCATCATCTCCGCCACCATCCTCTCCCCCTCCATCATCGCCTCCTCCGTCATCCCCTCCTCCATCATCCCCTCCACCGCCATCAGACGATAATAACAAATCTCCACCTCCGCCATCTGGCTCCTCCCCATCTCCACCACCACCTTCTGACAATGACAAGGACAAGCACTCGCCTCCGCCTCCGCCCCCACCCCATTCGAGCCATGAACAGTTTTCTCCACCTCCGCCACCACATCATCATCGATTGTCTCCACCAGGGTCATCAGAATCTGATACGCAAGAGGATAGTGGGGGTGGGAACCAATTGAGCGTGGCATCTATAATAGGAGTCGCAGCTGGAGCTGGGTTATTGCTCCTTGTCGTTGTCCTACTCGTCATTGCTTGTTCTAGAAGGAAAAGAAGATCGGAAGCTCCCATGCATTACTTCAATCAACAAGGAGATAATGACTATTATAAACGTCCAAATGGAGCTCCAAATCAGTATGGGTACAATAATGGTGAGCATGTTCTCAATATTCCTCCACCACCAGGTGCAGGTTGGGGACCTCCTCCACCAGCACCACCCCAACGGGTTAGTAGTGACTTGAGCACCTCTAGTTTCTCTGGGTCCCATGGTCCTGTATTGCCACCCCCACACCCTACTGTGGCCCTTGGATTTAACCAAAGCTCCTTCACATTTGATGAGTTATCAGCTGCCACTGGTGGGTTTTCCCAACGTAACCTACTAGGTCAAGGTGGGTTTGGATATGTACACAAAGGTGTTCTACCTAATGGCAAGGAAATAGCAGTGAAGAGCCTTAAATCTACCGGGGGCCAAGGTGATAGAGAATTCCAAGCAGAGGTTGATATTATTAGTCGTGTCCACCATCGCTATCTTGTGTCGCTTGTTGGGTATTCCCTTACGGAAAGTAGAAAGTTGTTGGTATATGAGTTTGTTCCTAACAAGACCCTTGATTACCACCTTCATGGAAAAGGAAGACCTGTCATGGATTGGGGCACCAGGCTCAAAATTGCAATTGGATCAGCCAAAGGACTTGCTTACTTACATGAGGATTGTCACCCTCGTATTATTCATCGAGACATAAAGGGTGCAAACATTCTACTTGAAAACAACTTTGAAGCCAAGGTGTCAGATTTTGGATTGGCAAAGTTTAGCCAAGACACTAACACTCATGTTTCTACTCGTGTAATGGGAACATTTGGGTATTTGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACAGAGAAATCTGATGTATTTTCATACGGTATTATGCTTTTGGAGCTCATAACAGGTCGACGCCCAGTGGACAACACTGGTGATTATGAAGAGGATAGCTTGGTTGATTGGGCTAAACCACTTTGTATAAAAGCTATGGAAAATGGTATATTTGATGGATTAGTGGATCCACGTTTAGAGGACAATTATGACAAACAGGAGATAACACGTATGGTGGCTTGTGCTGCTGCTAGCGTTAGGCACTCTGCAAGAAGACGCCCAAGAATGAGCCAGATTGTACGAGTACTAGAGGGAGATGCCTCATTAGACGTCCTTAATCATGATGGAGTTAAGCCTGGGCAAAGTGCAATGTTTAGCAGCGCAAGTGGCGAATATGATGCTGGGGCATATAGTGCTGACATGAAAAAGTTCAGGAAACTAGCATTTGATAGCGGCAATGCAAGCAGTGAGTTTGGTGGAACAAGTGAGTATGGCCTCAATCCTTCCATCTCAAGCAGTGAGCAATCATCTACTGAATATGGCAGGAGGACAGGAACTCGGATGCACACTCCTTGA	1923	0.4737	MASNSDSDSSTPPPPSDSSSSESPPPPDSSPPPPPNDNSSPPPPSSPPPSSPPPSSPPPSSPPPSSPPPPSDDNNKSPPPPSGSSPSPPPPSDNDKDKHSPPPPPPPHSSHEQFSPPPPPHHHRLSPPGSSESDTQEDSGGGNQLSVASIIGVAAGAGLLLLVVVLLVIACSRRKRRSEAPMHYFNQQGDNDYYKRPNGAPNQYGYNNGEHVLNIPPPPGAGWGPPPPAPPQRVSSDLSTSSFSGSHGPVLPPPHPTVALGFNQSSFTFDELSAATGGFSQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGGQGDREFQAEVDIISRVHHRYLVSLVGYSLTESRKLLVYEFVPNKTLDYHLHGKGRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENNFEAKVSDFGLAKFSQDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGIMLLELITGRRPVDNTGDYEEDSLVDWAKPLCIKAMENGIFDGLVDPRLEDNYDKQEITRMVACAAASVRHSARRRPRMSQIVRVLEGDASLDVLNHDGVKPGQSAMFSSASGEYDAGAYSADMKKFRKLAFDSGNASSEFGGTSEYGLNPSISSSEQSSTEYGRRTGTRMHTP.	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g00247	640	MobiDBLite	consensus disorder prediction	182	250	-	-
	Seca3g00247	640	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	399	411	IPR008271	GO:0004672\|GO:0006468
	Seca3g00247	640	MobiDBLite	consensus disorder prediction	103	125	-	-
	Seca3g00247	640	MobiDBLite	consensus disorder prediction	218	233	-	-
	Seca3g00247	640	SMART	serkin_6	279	515	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g00247	640	MobiDBLite	consensus disorder prediction	606	640	-	-
	Seca3g00247	640	Gene3D	Transferase(Phosphotransferase) domain 1	355	563	-	-
	Seca3g00247	640	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	156	602	IPR047117	-
	Seca3g00247	640	MobiDBLite	consensus disorder prediction	1	16	-	-
	Seca3g00247	640	Pfam	Protein kinase domain	280	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g00247	640	ProSiteProfiles	Protein kinase domain profile.	279	558	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g00247	640	MobiDBLite	consensus disorder prediction	1	142	-	-
	Seca3g00247	640	FunFam	Proline-rich receptor-like protein kinase PERK1	355	563	-	-
	Seca3g00247	640	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	255	354	-	-
	Seca3g00247	640	SUPERFAMILY	Protein kinase-like (PK-like)	259	552	IPR011009	-
	Seca3g00247	640	Gene3D	Phosphorylase Kinase; domain 1	256	354	-	-
	Seca3g00247	640	MobiDBLite	consensus disorder prediction	17	91	-	-
	Seca3g00247	640	ProSitePatterns	Protein kinases ATP-binding region signature.	285	307	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g00247	Seca-Chr3	3829232	3833309	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g00247	138	631	Trihelix Transcription Factor Family	AT1G70460	50.302	6.15e-156	464

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Seca3g00247		Pkinase	2.5e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g00247	-		-	gmx:100806299	775.778