Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00239 ATGTTGGATCGGCGAGGCATAGTGTGGTTTGGGTTTTTGTTCTTTCTGCTGTTTGAGGTGACATTGGAGCAGATTGAGCCACTGAGTTCCCAAACTGAGAGAGCAGCACTCCTTGAACTGAGAGCTTCTTTGGGGTTAAGGAGCAAGGAATGGCCAAGAAAGCCAGACCCTTGCTTAATCTGGATTGGTATCACATGCCAGAATGGTCGTGTTGTTGGGATCAATATCTCTGGCTTTAGAAGAACCCGTCTTGGGCGGAGAAACCCACAATTTGCAGTGGATGCCTTGGCCAATTTCACTCTCTTGCAGTCCTTCAATGCTTCCAATTTCCCCCTTCCTGGTCCTATTCCTGTTTGGTTTGGTCTCAGCCTCCCTTCACTTCGTGTGCTTGATCTTCGTTCTTGCTCCATTGTTAATGCTATTCCTTCCACACTTGGGAATTTAACCAACCTAACAGCTTTGTATCTTTCTGATAACAATCTTACTGGGACAGTTCCTGATACACTGGGTCAACTCTCTGCACTTTCAGTTCTTGATCTCTCCAGGAATTCTCTTGTTGGCTCCTTACCAACATCCTTTGCCTTTCTTGCAAATCTTTCAAGGTTACGATATTTGAATCTTTCCAGCAATGGCCTAACTTCTTTGCCTGCCCAACTTGGGGGTCTTACTAGCTTGGTAGACCTTGATCTTAGTGACAATTCTTTCTCTGGTGGAGTCCTTCCAGATTTGAAAAGGTTGAGGAACTTGCGGAGAATGATACTTGCAAACAGCAGGCTCAATGGACCTTTGCCGGCTGACTTGTTTACTGCTCCATTGAGGTTGCAGATCATAGTGCTGAGTCAAAACAATTTTACTGGTTCTTTGCCTGTTGGGTTGTGGTCTCTGCCAAGATTGACCTTCCTTGATGTGTCTGCCAATAACTTCAGTGGTCTGCTTCCTAATTCTAGTTATGCTGCTAATGCTACTATTGCTGTGCTCAATGTTTCTCATAATAAGTTTTATGGAGGCCTCACACCTGTGCTCCAAAGGTTCAGTTTTGTCGATCTCTCCAACAATTATTTTGAGGGCAAGGTTCTGGATTTCATACGTAATGCATCTCTAGATGCCAACTGCCTCCAAAACACGACAAATCAGAGGACAACAGTGGAATGTGCATCATTTTATGCAGAGAGGGGCCTCAGTTTTGATAATTTTGGACGCCCTAATACGACAAACCCTCCCACTGCAAACGGGTCTAGGAAGAGTAATAAAACTAAGATTATATTGGCAGCAGTCTTGGGTGGACTGGGTTTATTTGCACTTTTGGTGTTCCTACTGGGATTGTTGCTTCTGTGCACTCGTAAGAGGGGTAATTCAAATCAAAGGGGGAATGGTGTGGGTCCTGCTCCTGCTGGAGGCAGTCCTCCACATCCTGGTGCATCAATAAACTTTTCAAATATAGGAGACTCATTTACATATCATCAATTGCTCCAGGCAACAGGAGATTTCAATGATGCAAATTTTATCAAACATGGCCACACTGGGGATTTATTTAATGGTGTTTTGGAAAATGGGATTCCTGTTGTCATCAAAAGGATCGACATGCATTCAACTAAAAAGGATGCTTACCTAGTGGAATTGGACTTTTTCAGTAAGGTTTCCCATCAAAGATTTGTTCCCTTGTTAGGTCATTGCATAAAAAATGAGAACGAGAAGTTTCTGGTATATAAACATATGCCAAATGGGGACTTGTCTAATTCCTTATTCTACAAAAACGCTACATCTGAAGATGGCACTTTGCAGTCCTTGGACTGGATAACTAGGTTGAAAATTGCTACTGGAGCAGCAGAGGCCCTGACGTATCTGCATCAAGAATGTATTCCACCCATTGTTCACAGAGATATTCAAGCAAGCAGTATACTTCTAGATGATAAATATGAAGTTCGGTTAGGGAGTCTAAGTGAAGCATGTTCCCAAGAAGGTGATACTCATCAAAGTAAAATCACCCGGTTTCTGCGATTCCCTCAGTCCTCTGAACAAGGCACATCTGGTTCATCAACAACAATTTGTGCCTATGACGTGTATTGCTTTGGGAAAGTGTTACTTGAGCTGGTGACTGGTAAGCTGGGCATTAGTGCATCAAGTGATGGTGAAGTAAAGGAATGGCTTGATCAGATTCTACCTTGCATTAGTATGTATGACAAGGAGCTTGTGACAAAAATTGTGGATCCATCTCTGGTTGTTGATGAGGATTTCTTAGAGGAAGTGTGGGCTATAGCCATTGTTGCTAGGTCTTGCCTAAATCCCAAACCTTCAAGAAGACCCCCAATGAGACATGTTCTCAAAGCATTGGAAAACCCTTTAAAAGTTGTAAGGGAAGAAAATTTCAGTTCTGCAAGGCTTAAAGCAACATCTTCTAGAGGCTCTTGGAATGCTACTTTATTTGGTAGTTGGCGTCAGAGTTCATCTGATGTAGCAGTAATTCCAGCAGCCTCTGGGACAAAATTAGAAGGAACTAGTAGTTTAAAGCTTTCAGGAACTACAGGGTCACAGTCACAGGGTAGCTTCCACAATGGTGGGGCTGATATTTCATCATCTCGGAGGCGTCATTCAAATGATATATTCCCAGAGCCATCTGGTTTACATGATGTAGTAGGAATAGAGGCTTGA 2649 0.4304 MLDRRGIVWFGFLFFLLFEVTLEQIEPLSSQTERAALLELRASLGLRSKEWPRKPDPCLIWIGITCQNGRVVGINISGFRRTRLGRRNPQFAVDALANFTLLQSFNASNFPLPGPIPVWFGLSLPSLRVLDLRSCSIVNAIPSTLGNLTNLTALYLSDNNLTGTVPDTLGQLSALSVLDLSRNSLVGSLPTSFAFLANLSRLRYLNLSSNGLTSLPAQLGGLTSLVDLDLSDNSFSGGVLPDLKRLRNLRRMILANSRLNGPLPADLFTAPLRLQIIVLSQNNFTGSLPVGLWSLPRLTFLDVSANNFSGLLPNSSYAANATIAVLNVSHNKFYGGLTPVLQRFSFVDLSNNYFEGKVLDFIRNASLDANCLQNTTNQRTTVECASFYAERGLSFDNFGRPNTTNPPTANGSRKSNKTKIILAAVLGGLGLFALLVFLLGLLLLCTRKRGNSNQRGNGVGPAPAGGSPPHPGASINFSNIGDSFTYHQLLQATGDFNDANFIKHGHTGDLFNGVLENGIPVVIKRIDMHSTKKDAYLVELDFFSKVSHQRFVPLLGHCIKNENEKFLVYKHMPNGDLSNSLFYKNATSEDGTLQSLDWITRLKIATGAAEALTYLHQECIPPIVHRDIQASSILLDDKYEVRLGSLSEACSQEGDTHQSKITRFLRFPQSSEQGTSGSSTTICAYDVYCFGKVLLELVTGKLGISASSDGEVKEWLDQILPCISMYDKELVTKIVDPSLVVDEDFLEEVWAIAIVARSCLNPKPSRRPPMRHVLKALENPLKVVREENFSSARLKATSSRGSWNATLFGSWRQSSSDVAVIPAASGTKLEGTSSLKLSGTTGSQSQGSFHNGGADISSSRRRHSNDIFPEPSGLHDVVGIEA. 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00239 882 Gene3D Ribonuclease Inhibitor 198 396 IPR032675 -
Seca3g00239 882 Gene3D Ribonuclease Inhibitor 28 197 IPR032675 -
Seca3g00239 882 MobiDBLite consensus disorder prediction 831 855 - -
Seca3g00239 882 Pfam Leucine rich repeat 125 185 IPR001611 GO:0005515
Seca3g00239 882 Pfam Leucine rich repeat 247 308 IPR001611 GO:0005515
Seca3g00239 882 Pfam Leucine Rich repeats (2 copies) 201 236 IPR025875 -
Seca3g00239 882 SUPERFAMILY Protein kinase-like (PK-like) 475 777 IPR011009 -
Seca3g00239 882 FunFam Predicted protein 466 571 - -
Seca3g00239 882 Gene3D Phosphorylase Kinase; domain 1 473 571 - -
Seca3g00239 882 FunFam Putative LRR receptor-like serine/threonine-protein kinase 572 797 - -
Seca3g00239 882 ProSiteProfiles Protein kinase domain profile. 496 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g00239 882 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 270 400 - -
Seca3g00239 882 Pfam Protein tyrosine and serine/threonine kinase 502 775 IPR001245 GO:0004672|GO:0006468
Seca3g00239 882 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Seca3g00239 882 Gene3D Transferase(Phosphotransferase) domain 1 572 798 - -
Seca3g00239 882 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 30 189 - -
Seca3g00239 882 SUPERFAMILY L domain-like 102 373 - -
Seca3g00239 882 MobiDBLite consensus disorder prediction 453 472 - -
Seca3g00239 882 MobiDBLite consensus disorder prediction 831 882 - -
Seca3g00239 882 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 79 778 - -
Seca3g00239 882 ProSiteProfiles Leucine-rich repeat profile. 201 223 IPR001611 GO:0005515
Seca3g00239 882 SMART LRR_typ_2 246 270 IPR003591 -
Seca3g00239 882 SMART LRR_typ_2 172 195 IPR003591 -
Seca3g00239 882 SMART LRR_typ_2 148 171 IPR003591 -
Seca3g00239 882 SMART LRR_typ_2 199 222 IPR003591 -
Seca3g00239 882 SMART LRR_typ_2 295 318 IPR003591 -
Seca3g00239 882 SMART LRR_typ_2 124 147 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00239 Seca-Chr3 3741182 3746810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00239 32 669 Miscellaneous Gene Families AT2G16250 54.559 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Seca3g00239 PK_Tyr_Ser-Thr 2.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00239 - - gmx:100805769 1387.09