Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g00238 ATGGCTTCTGCAGAAATTGAGTACCGTTGCTTTGTTGGTGGGCTAGCCTGGGCCACCGACAACGATGCCCTCGAGAAAGCCTTCTCTCCCTATGGCGAGATCGTCGAATCGAAGGTTATCAACGACCGTGAGACTGGAAGGTCGAGAGGCTTTGGATTTGTCACCTTCGCTACCGAGCAGGCCATGAGGGATGCTATCGAAGGGATGAACGGCCAGAATCTTGATGGCCGTAACATCACTGTGAACGAGGCTCAGTCCCGTGGTAGGGGCGGCGGTGGCGGTGGCGGTTACGGAGGTGGTGGCGGTGGTGGATATGGTGGCGGAGGGTATAGCCGTGGTGGAGGAGGAGGAGGATACGGAGGTGGTGGCCGACGTGAAGGTGGTGGTGGTTACAACCGCAATGGTGGCGGAGGCTACGGTGGTGGCGGTGGCTATGGAGGAGGTGGTGGTGGTTATGGCGGTGGACGAGACCGTGGTTATGGAGATGGTGGATCCCGCTACTCAAGGGGAGGTGGTGCTTCCGACGGCGGAAGCTGGAGGAGTTAA 546 0.5916 MASAEIEYRCFVGGLAWATDNDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGYGGGGGGGYGGGGYSRGGGGGGYGGGGRREGGGGYNRNGGGGYGGGGGYGGGGGGYGGGRDRGYGDGGSRYSRGGGASDGGSWRS. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g00238 181 Gene3D - 2 120 IPR012677 -
Seca3g00238 181 FunFam Glycine-rich RNA-binding protein GRP1A 2 113 - -
Seca3g00238 181 MobiDBLite consensus disorder prediction 147 181 - -
Seca3g00238 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Seca3g00238 181 SUPERFAMILY RNA-binding domain, RBD 9 118 IPR035979 GO:0003676
Seca3g00238 181 SMART rrm1_1 9 82 IPR000504 GO:0003723
Seca3g00238 181 CDD RRM2_NsCP33_like 9 84 - -
Seca3g00238 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Seca3g00238 181 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 9 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g00238 Seca-Chr3 3664571 3666318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g00238 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 7.17e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g00238 - K13195 gmx:100777821 165.236